CAZyme3D

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Entry ID

Information for CAZyme ID: AGT25470.1

Basic Information

GenBank IDAGT25470.1
FamilyGH32
Sequence Length810
UniProt IDAGT25470.1(MOD)Download
Average pLDDT?82.23
CAZy50 ID26313
CAZy50 RepYes, AGT25470.1
Structure ClusterSC_GH32_clus70
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1380908
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella pneumoniae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSLPSRLPAI  LQAVMQGQPQ  ALADSHYPQW  HLAPVNGLLN  DPNGFCQVAG  RYHLFYQWNP60
LACDHTYKCW  GHWSSADLLH  WRHEPIALMP  DEEYDRNGCY  SGSAVEFEGA  LTLCYTGNVK120
FPDGGRTAWQ  CLATENADGT  FRKLGPVLPL  PEGYTGHVRD  PKVWRQDGRW  YMVLGAQDVQ180
QRGKVLLFTA  SDLREWRLVG  EIAGHDVNGL  ANAGYMWECP  DLFPLADTHL  LICCPQGLAR240
EAQRFLNTYP  AVWMAGRFDA  ERGIFDHGPL  HELDSGFEFY  APQTMQADDG  RRLLVGWMGV300
PDGDEMHQPT  RAQGWIHQMT  CVRELEWQAG  TLYQRPLREL  VALRGEAQGW  CGQTLPLAPM360
ELAFDMPQQH  AGAGLCRRPA  AHRQSRRSAS  VAPRPADGGD  ASPLLARRGA  PPADLYRPLQ420
RRDFHQRWRR  GDEQPLLPGL  SGAAHLQRCD  AGGILPLAAA  AMHGRISVLL  SGSRVLMKTK480
RVTIKDIAEL  AGVSKATASL  VLNGRGKELR  VAQETRERVL  AIAREQHYQP  SIHARSLRDN540
RSHTIGLVVP  EITNYGFAVF  SHELETLCRE  AGVQLLISCT  DENPGQESVV  VNNMIARQVD600
GLIVASCMHS  DADYQKLSEQ  LPVVLFDRFP  SDSALPLVMT  DSVTPTAELI  SRIAPQHADE660
FWFLGGQPRL  SPSRDRLAGF  TQGLAQAGIT  LRPEWVINGN  YHPSSGYEMF  AALCARLGRP720
PKALFTAACG  LLEGVLRYMS  QHHLLDSNIH  LASFDDHYLY  DSLSLRIDTV  QQDNRQLAWH780
CYDLLSQLID  GQAPEPLQRY  LPATLQIRHP  810

Predicted 3D structure by AlphaFold2 with pLDDT = 82.23 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSLPSRLPAI  LQAVMQGQPQ  ALADSHYPQW  HLAPVNGLLN  DPNGFCQVAG  RYHLFYQWNP60
LACDHTYKCW  GHWSSADLLH  WRHEPIALMP  DEEYDRNGCY  SGSAVEFEGA  LTLCYTGNVK120
FPDGGRTAWQ  CLATENADGT  FRKLGPVLPL  PEGYTGHVRD  PKVWRQDGRW  YMVLGAQDVQ180
QRGKVLLFTA  SDLREWRLVG  EIAGHDVNGL  ANAGYMWECP  DLFPLADTHL  LICCPQGLAR240
EAQRFLNTYP  AVWMAGRFDA  ERGIFDHGPL  HELDSGFEFY  APQTMQADDG  RRLLVGWMGV300
PDGDEMHQPT  RAQGWIHQMT  CVRELEWQAG  TLYQRPLREL  VALRGEAQGW  CGQTLPLAPM360
ELAFDMPQQH  AGAGLCRRPA  AHRQSRRSAS  VAPRPADGGD  ASPLLARRGA  PPADLYRPLQ420
RRDFHQRWRR  GDEQPLLPGL  SGAAHLQRCD  AGGILPLAAA  AMHGRISVLL  SGSRVLMKTK480
RVTIKDIAEL  AGVSKATASL  VLNGRGKELR  VAQETRERVL  AIAREQHYQP  SIHARSLRDN540
RSHTIGLVVP  EITNYGFAVF  SHELETLCRE  AGVQLLISCT  DENPGQESVV  VNNMIARQVD600
GLIVASCMHS  DADYQKLSEQ  LPVVLFDRFP  SDSALPLVMT  DSVTPTAELI  SRIAPQHADE660
FWFLGGQPRL  SPSRDRLAGF  TQGLAQAGIT  LRPEWVINGN  YHPSSGYEMF  AALCARLGRP720
PKALFTAACG  LLEGVLRYMS  QHHLLDSNIH  LASFDDHYLY  DSLSLRIDTV  QQDNRQLAWH780
CYDLLSQLID  GQAPEPLQRY  LPATLQIRHP  810

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(31-336)

MSLPSRLPAI  LQAVMQGQPQ  ALADSHYPQW  HLAPVNGLLN  DPNGFCQVAG  RYHLFYQWNP60
LACDHTYKCW  GHWSSADLLH  WRHEPIALMP  DEEYDRNGCY  SGSAVEFEGA  LTLCYTGNVK120
FPDGGRTAWQ  CLATENADGT  FRKLGPVLPL  PEGYTGHVRD  PKVWRQDGRW  YMVLGAQDVQ180
QRGKVLLFTA  SDLREWRLVG  EIAGHDVNGL  ANAGYMWECP  DLFPLADTHL  LICCPQGLAR240
EAQRFLNTYP  AVWMAGRFDA  ERGIFDHGPL  HELDSGFEFY  APQTMQADDG  RRLLVGWMGV300
PDGDEMHQPT  RAQGWIHQMT  CVRELEWQAG  TLYQRPLREL  VALRGEAQGW  CGQTLPLAPM360
ELAFDMPQQH  AGAGLCRRPA  AHRQSRRSAS  VAPRPADGGD  ASPLLARRGA  PPADLYRPLQ420
RRDFHQRWRR  GDEQPLLPGL  SGAAHLQRCD  AGGILPLAAA  AMHGRISVLL  SGSRVLMKTK480
RVTIKDIAEL  AGVSKATASL  VLNGRGKELR  VAQETRERVL  AIAREQHYQP  SIHARSLRDN540
RSHTIGLVVP  EITNYGFAVF  SHELETLCRE  AGVQLLISCT  DENPGQESVV  VNNMIARQVD600
GLIVASCMHS  DADYQKLSEQ  LPVVLFDRFP  SDSALPLVMT  DSVTPTAELI  SRIAPQHADE660
FWFLGGQPRL  SPSRDRLAGF  TQGLAQAGIT  LRPEWVINGN  YHPSSGYEMF  AALCARLGRP720
PKALFTAACG  LLEGVLRYMS  QHHLLDSNIH  LASFDDHYLY  DSLSLRIDTV  QQDNRQLAWH780
CYDLLSQLID  GQAPEPLQRY  LPATLQIRHP  810

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help