CAZyme3D

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Entry ID

Information for CAZyme ID: AGS52433.1

Basic Information

GenBank IDAGS52433.1
FamilyGH5_4
Sequence Length742
UniProt IDA0A806JZW4(100,100)Download
Average pLDDT?84.24
CAZy50 ID33634
CAZy50 RepYes, AGS52433.1
Structure ClusterSC_GH5_clus68
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1181567
KingdomBacteria
Phylum
Class
Order
Family
Genus
Speciesuncultured bacterium contig00100

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKLVKEFCI  IAIILAIGFS  LTVCDTQDTG  NSGKNNDTPS  PTVTEVIVSP  SPAAVVKGED60
IAFNAVVTGT  NNPSQGVTWS  IDPSTPAKNS  GTNISAAGVL  TVAAEETLPS  LTVRATSYED120
TLKSGTSTVT  IHSDSQTVPT  VSTVTVSPST  AIVEKGGKQT  FTATVTGTNN  PAGTVTWSIT180
QTGKNEGTVI  SSGGELTVAA  GETLATLTVR  ATSTVNTGKY  GEAAVTVKEP  STPTGFNMTA240
AELVAGMRLG  WNLGNTLDAH  GGGTVTQMET  AWGNPVTTQA  NIDTLKNRGF  NIIRIPVSWS300
RAVDANYNIR  TDFMARVKEI  VDYAVNNDMY  ILLNTHHDED  IFKFTPSEKT  ASIAAFNKIW360
TQIADAFKNY  GEKLIFEGLN  EPRTIGSSAE  WNGGTAEERA  ILNEHYVNFV  NVVRASGGNN420
NKRFLLINTY  GGSGTAAAIN  GLVLPADTAQ  NKIIVSFHNY  APYDFALNTN  TDPSEGSVAV480
STWNKNNSSD  TSPISTPINN  AYNKFAANGI  PVIIGEFGAM  NRNNESVRAQ  WAEYYVGYAA540
EKGMPCVWWD  NGVTSGNGEL  FGLLNRNNNT  WSYPLLVEAL  VTAAGSSGSG  ENVEEPAPPT600
VTGNMGSYVF  GTQDGSEEPN  YRLAIWELSS  ENVAIAKTAG  AKVVLQLTSA  PSAGMQFVWQ660
GPATNSWWNS  QDILGDNGSP  LNSSVTWNTS  AKTLTINLNA  NTVANYSAGD  NPFTAQSQLR720
LLIQYFGGSG  VNDLGITSAN  LQ742

Predicted 3D structure by AlphaFold2 with pLDDT = 84.24 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKKLVKEFCI  IAIILAIGFS  LTVCDTQDTG  NSGKNNDTPS  PTVTEVIVSP  SPAAVVKGED60
IAFNAVVTGT  NNPSQGVTWS  IDPSTPAKNS  GTNISAAGVL  TVAAEETLPS  LTVRATSYED120
TLKSGTSTVT  IHSDSQTVPT  VSTVTVSPST  AIVEKGGKQT  FTATVTGTNN  PAGTVTWSIT180
QTGKNEGTVI  SSGGELTVAA  GETLATLTVR  ATSTVNTGKY  GEAAVTVKEP  STPTGFNMTA240
AELVAGMRLG  WNLGNTLDAH  GGGTVTQMET  AWGNPVTTQA  NIDTLKNRGF  NIIRIPVSWS300
RAVDANYNIR  TDFMARVKEI  VDYAVNNDMY  ILLNTHHDED  IFKFTPSEKT  ASIAAFNKIW360
TQIADAFKNY  GEKLIFEGLN  EPRTIGSSAE  WNGGTAEERA  ILNEHYVNFV  NVVRASGGNN420
NKRFLLINTY  GGSGTAAAIN  GLVLPADTAQ  NKIIVSFHNY  APYDFALNTN  TDPSEGSVAV480
STWNKNNSSD  TSPISTPINN  AYNKFAANGI  PVIIGEFGAM  NRNNESVRAQ  WAEYYVGYAA540
EKGMPCVWWD  NGVTSGNGEL  FGLLNRNNNT  WSYPLLVEAL  VTAAGSSGSG  ENVEEPAPPT600
VTGNMGSYVF  GTQDGSEEPN  YRLAIWELSS  ENVAIAKTAG  AKVVLQLTSA  PSAGMQFVWQ660
GPATNSWWNS  QDILGDNGSP  LNSSVTWNTS  AKTLTINLNA  NTVANYSAGD  NPFTAQSQLR720
LLIQYFGGSG  VNDLGITSAN  LQ742

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_4(269-552)

MKKLVKEFCI  IAIILAIGFS  LTVCDTQDTG  NSGKNNDTPS  PTVTEVIVSP  SPAAVVKGED60
IAFNAVVTGT  NNPSQGVTWS  IDPSTPAKNS  GTNISAAGVL  TVAAEETLPS  LTVRATSYED120
TLKSGTSTVT  IHSDSQTVPT  VSTVTVSPST  AIVEKGGKQT  FTATVTGTNN  PAGTVTWSIT180
QTGKNEGTVI  SSGGELTVAA  GETLATLTVR  ATSTVNTGKY  GEAAVTVKEP  STPTGFNMTA240
AELVAGMRLG  WNLGNTLDAH  GGGTVTQMET  AWGNPVTTQA  NIDTLKNRGF  NIIRIPVSWS300
RAVDANYNIR  TDFMARVKEI  VDYAVNNDMY  ILLNTHHDED  IFKFTPSEKT  ASIAAFNKIW360
TQIADAFKNY  GEKLIFEGLN  EPRTIGSSAE  WNGGTAEERA  ILNEHYVNFV  NVVRASGGNN420
NKRFLLINTY  GGSGTAAAIN  GLVLPADTAQ  NKIIVSFHNY  APYDFALNTN  TDPSEGSVAV480
STWNKNNSSD  TSPISTPINN  AYNKFAANGI  PVIIGEFGAM  NRNNESVRAQ  WAEYYVGYAA540
EKGMPCVWWD  NGVTSGNGEL  FGLLNRNNNT  WSYPLLVEAL  VTAAGSSGSG  ENVEEPAPPT600
VTGNMGSYVF  GTQDGSEEPN  YRLAIWELSS  ENVAIAKTAG  AKVVLQLTSA  PSAGMQFVWQ660
GPATNSWWNS  QDILGDNGSP  LNSSVTWNTS  AKTLTINLNA  NTVANYSAGD  NPFTAQSQLR720
LLIQYFGGSG  VNDLGITSAN  LQ742

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help