CAZyme3D

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Entry ID

Information for CAZyme ID: AGS51796.1

Basic Information

GenBank IDAGS51796.1
FamilyGH5_4
Sequence Length428
UniProt IDA0A806KB31(100,100)Download
Average pLDDT?86.50
CAZy50 ID86351
CAZy50 RepYes, AGS51796.1
Structure ClusterSC_GH5_clus93
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1181537
KingdomBacteria
Phylum
Class
Order
Family
Genus
Speciesuncultured bacterium contig00053

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSLKSAQEIK  IIFFLVVIMT  FTVQCSGNKN  SSNTNNADST  DAGSLSSLEF  VKTMGAGWNL60
GNTLDAHWNR  ARPWISNPSP  AQIETLWGNP  VTTKAMINFL  KEEGFTTIRI  PVTWYIFTGQ120
APDYIIDSRW  MDRVQEVVDY  VIDNGMFCIL  NAHHEDYVSG  SNYENGWFRL  YDREEDRALD180
DSEKERINSR  FAKIWAQIAE  RFKNYSEYLI  FEGINEPRTE  GLNNISYQMY  EEQNRFLNEL240
LQTFINTVRD  SGGKNYDRHL  MVTPYFASVG  MSLSDSDGRI  RSFLDRNARK  LRVTDPRDRL300
IVSLHYYEPW  GFVTAPDDSQ  WHSWYFDMDV  GSVSSNINNV  YRIIRENFIL  YGIPVIMGET360
GAIRRIMPDG  NSNDAERVKW  AQYYISGLKQ  MGVPVIIWDD  GGMFKLFDRS  ALRWEYPEIA420
AAIVNASK428

Predicted 3D structure by AlphaFold2 with pLDDT = 86.50 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSLKSAQEIK  IIFFLVVIMT  FTVQCSGNKN  SSNTNNADST  DAGSLSSLEF  VKTMGAGWNL60
GNTLDAHWNR  ARPWISNPSP  AQIETLWGNP  VTTKAMINFL  KEEGFTTIRI  PVTWYIFTGQ120
APDYIIDSRW  MDRVQEVVDY  VIDNGMFCIL  NAHHEDYVSG  SNYENGWFRL  YDREEDRALD180
DSEKERINSR  FAKIWAQIAE  RFKNYSEYLI  FEGINEPRTE  GLNNISYQMY  EEQNRFLNEL240
LQTFINTVRD  SGGKNYDRHL  MVTPYFASVG  MSLSDSDGRI  RSFLDRNARK  LRVTDPRDRL300
IVSLHYYEPW  GFVTAPDDSQ  WHSWYFDMDV  GSVSSNINNV  YRIIRENFIL  YGIPVIMGET360
GAIRRIMPDG  NSNDAERVKW  AQYYISGLKQ  MGVPVIIWDD  GGMFKLFDRS  ALRWEYPEIA420
AAIVNASK428

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_4(84-401)

MSLKSAQEIK  IIFFLVVIMT  FTVQCSGNKN  SSNTNNADST  DAGSLSSLEF  VKTMGAGWNL60
GNTLDAHWNR  ARPWISNPSP  AQIETLWGNP  VTTKAMINFL  KEEGFTTIRI  PVTWYIFTGQ120
APDYIIDSRW  MDRVQEVVDY  VIDNGMFCIL  NAHHEDYVSG  SNYENGWFRL  YDREEDRALD180
DSEKERINSR  FAKIWAQIAE  RFKNYSEYLI  FEGINEPRTE  GLNNISYQMY  EEQNRFLNEL240
LQTFINTVRD  SGGKNYDRHL  MVTPYFASVG  MSLSDSDGRI  RSFLDRNARK  LRVTDPRDRL300
IVSLHYYEPW  GFVTAPDDSQ  WHSWYFDMDV  GSVSSNINNV  YRIIRENFIL  YGIPVIMGET360
GAIRRIMPDG  NSNDAERVKW  AQYYISGLKQ  MGVPVIIWDD  GGMFKLFDRS  ALRWEYPEIA420
AAIVNASK428

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help