CAZyme3D

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Entry ID

Information for CAZyme ID: AGM37788.1

Basic Information

GenBank IDAGM37788.1
FamilyGT52
Sequence Length323
UniProt IDR4VFW8(100,100)Download
Average pLDDT?86.80
CAZy50 ID145504
CAZy50 RepYes, AGM37788.1
Structure ClusterSC_GT52_clus8
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID470
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderMoraxellales
FamilyMoraxellaceae
GenusAcinetobacter
SpeciesAcinetobacter baumannii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MYVYGVKLVV  SQRNLLICFT  PLQILIASKI  LVEKDFDTLL  ISYVDNDKYR  FYFDKISAIS60
RKSWFFKINS  TNKFSRMMDM  IKLKKIIREF  DPHYNIVYFA  SLDNAFLHLV  VSNISFNSIE120
TFDDGSANIN  KDSTYFKGER  KSSFQLLFSA  LLGIKFNKSI  ILDKIYKHYS  IFEGYSNIVP180
NVEYIKIFES  ENLVPPNKVI  KIFLGQPFEE  MGFIDKEELY  LFLRKIGIDY  YFPHPREKHD240
KDFYFEIVQS  KLIFEEFILE  LLTDGNLIEV  YTLLSTAGLN  VSMLDYVTVK  VIRSKDLYMR300
YSSLYKVFQD  MKVEFIDFDG  ISL323

Predicted 3D structure by AlphaFold2 with pLDDT = 86.80 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MYVYGVKLVV  SQRNLLICFT  PLQILIASKI  LVEKDFDTLL  ISYVDNDKYR  FYFDKISAIS60
RKSWFFKINS  TNKFSRMMDM  IKLKKIIREF  DPHYNIVYFA  SLDNAFLHLV  VSNISFNSIE120
TFDDGSANIN  KDSTYFKGER  KSSFQLLFSA  LLGIKFNKSI  ILDKIYKHYS  IFEGYSNIVP180
NVEYIKIFES  ENLVPPNKVI  KIFLGQPFEE  MGFIDKEELY  LFLRKIGIDY  YFPHPREKHD240
KDFYFEIVQS  KLIFEEFILE  LLTDGNLIEV  YTLLSTAGLN  VSMLDYVTVK  VIRSKDLYMR300
YSSLYKVFQD  MKVEFIDFDG  ISL323

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT52(35-294)

MYVYGVKLVV  SQRNLLICFT  PLQILIASKI  LVEKDFDTLL  ISYVDNDKYR  FYFDKISAIS60
RKSWFFKINS  TNKFSRMMDM  IKLKKIIREF  DPHYNIVYFA  SLDNAFLHLV  VSNISFNSIE120
TFDDGSANIN  KDSTYFKGER  KSSFQLLFSA  LLGIKFNKSI  ILDKIYKHYS  IFEGYSNIVP180
NVEYIKIFES  ENLVPPNKVI  KIFLGQPFEE  MGFIDKEELY  LFLRKIGIDY  YFPHPREKHD240
KDFYFEIVQS  KLIFEEFILE  LLTDGNLIEV  YTLLSTAGLN  VSMLDYVTVK  VIRSKDLYMR300
YSSLYKVFQD  MKVEFIDFDG  ISL323

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help