CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: AGK90844.1

Basic Information

GenBank IDAGK90844.1
FamilyGH34
Sequence Length363
UniProt IDA0A8J9W2T7(100,100)Download
Average pLDDT?92.36
CAZy50 ID124707
CAZy50 RepYes, AGK90844.1
Structure ClusterSC_GH34_clus15
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID234072
KingdomEukaryota
PhylumChordata
ClassLepidosauria
OrderSquamata
FamilyColubridae
GenusDasypeltis
SpeciesDasypeltis scabra

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPNQHTLLLF  NLLPVGSNIS  TWWNFGSMLL  ACSMMQTLTG  FFLAIHYTAN  INLAFSSIIH60
ITRDIPYGWI  MQNLHAIGAS  MFFICIYIHI  ARGLYYGSYL  NKGVWMSGTT  LLLILMATAF120
FGYVLPWGQM  SFWAATVITN  LLTAIPYIGT  MLTTWLWGGF  SINDPTLTRF  FALHFILPFA180
IISMSSIHIM  LLHTEGSSNP  LGTNSDIDKI  PFHPYHSYKD  MLMLTMMITA  MFIIMSFTPN240
IFNDPENFSK  ANPLVTPQHI  KPEWYFLFAY  GILRSIPNKL  GGTVALVLSV  MILMTAPFSH300
TSHTRSTTFR  PMMQTMFWTL  VATFITITWA  ATKPVEPPFT  LIGTNNFYTM  LPILHLKPTS360
XLI363

Predicted 3D structure by AlphaFold2 with pLDDT = 92.36 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPNQHTLLLF  NLLPVGSNIS  TWWNFGSMLL  ACSMMQTLTG  FFLAIHYTAN  INLAFSSIIH60
ITRDIPYGWI  MQNLHAIGAS  MFFICIYIHI  ARGLYYGSYL  NKGVWMSGTT  LLLILMATAF120
FGYVLPWGQM  SFWAATVITN  LLTAIPYIGT  MLTTWLWGGF  SINDPTLTRF  FALHFILPFA180
IISMSSIHIM  LLHTEGSSNP  LGTNSDIDKI  PFHPYHSYKD  MLMLTMMITA  MFIIMSFTPN240
IFNDPENFSK  ANPLVTPQHI  KPEWYFLFAY  GILRSIPNKL  GGTVALVLSV  MILMTAPFSH300
TSHTRSTTFR  PMMQTMFWTL  VATFITITWA  ATKPVEPPFT  LIGTNNFYTM  LPILHLKPTS360
XLI363

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MPNQHTLLLF  NLLPVGSNIS  TWWNFGSMLL  ACSMMQTLTG  FFLAIHYTAN  INLAFSSIIH60
ITRDIPYGWI  MQNLHAIGAS  MFFICIYIHI  ARGLYYGSYL  NKGVWMSGTT  LLLILMATAF120
FGYVLPWGQM  SFWAATVITN  LLTAIPYIGT  MLTTWLWGGF  SINDPTLTRF  FALHFILPFA180
IISMSSIHIM  LLHTEGSSNP  LGTNSDIDKI  PFHPYHSYKD  MLMLTMMITA  MFIIMSFTPN240
IFNDPENFSK  ANPLVTPQHI  KPEWYFLFAY  GILRSIPNKL  GGTVALVLSV  MILMTAPFSH300
TSHTRSTTFR  PMMQTMFWTL  VATFITITWA  ATKPVEPPFT  LIGTNNFYTM  LPILHLKPTS360
LI362

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help