CAZyme3D

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Entry ID

Information for CAZyme ID: AGG14442.1

Basic Information

GenBank IDAGG14442.1
FamilyGT19
Sequence Length355
UniProt IDM1R5K6(100,100)Download
Average pLDDT?91.24
CAZy50 ID129286
CAZy50 RepYes, AGG14442.1
Structure ClusterSC_GT19_clus14
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID547144
KingdomBacteria
PhylumAquificota
ClassAquificae
OrderAquificales
FamilyAquificaceae
GenusHydrogenobaculum
SpeciesHydrogenobaculum sp. HO

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDDLFLSVGD  LSAANYVVNI  LKHLKDKHLN  ISGITDTRME  ELGVKPIANI  KDLNLVGIIE60
VLPKVFKIKK  IINLAIKKAN  NSRWAMLCDA  PGFNFRLMKN  LKHNHIIYFI  SPQVWAWKPQ120
RIKEIVKYVR  HLIVILPFEL  DIYKPYENEH  FNVHYFGHPL  LDMIKPSSVQ  KENIIAMLPG180
SRNSEFKRHI  GLLEELSYYI  YKTFHMKSLI  PIASTVDYPI  YKKDYIETTK  ESSLDVMRRA240
KFGIIASGTA  SLEASLLGLP  HIIFYRLNPI  TLQIAKRLVK  SKYIGLPNII  MDKEIIPELI300
QPSKEDIINV  VSSYLENPSK  VNSMRENLSL  LREKLGPENA  TERIADFIEN  ILKSG355

Predicted 3D structure by AlphaFold2 with pLDDT = 91.24 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MDDLFLSVGD  LSAANYVVNI  LKHLKDKHLN  ISGITDTRME  ELGVKPIANI  KDLNLVGIIE60
VLPKVFKIKK  IINLAIKKAN  NSRWAMLCDA  PGFNFRLMKN  LKHNHIIYFI  SPQVWAWKPQ120
RIKEIVKYVR  HLIVILPFEL  DIYKPYENEH  FNVHYFGHPL  LDMIKPSSVQ  KENIIAMLPG180
SRNSEFKRHI  GLLEELSYYI  YKTFHMKSLI  PIASTVDYPI  YKKDYIETTK  ESSLDVMRRA240
KFGIIASGTA  SLEASLLGLP  HIIFYRLNPI  TLQIAKRLVK  SKYIGLPNII  MDKEIIPELI300
QPSKEDIINV  VSSYLENPSK  VNSMRENLSL  LREKLGPENA  TERIADFIEN  ILKSG355

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT19(5-335)

MDDLFLSVGD  LSAANYVVNI  LKHLKDKHLN  ISGITDTRME  ELGVKPIANI  KDLNLVGIIE60
VLPKVFKIKK  IINLAIKKAN  NSRWAMLCDA  PGFNFRLMKN  LKHNHIIYFI  SPQVWAWKPQ120
RIKEIVKYVR  HLIVILPFEL  DIYKPYENEH  FNVHYFGHPL  LDMIKPSSVQ  KENIIAMLPG180
SRNSEFKRHI  GLLEELSYYI  YKTFHMKSLI  PIASTVDYPI  YKKDYIETTK  ESSLDVMRRA240
KFGIIASGTA  SLEASLLGLP  HIIFYRLNPI  TLQIAKRLVK  SKYIGLPNII  MDKEIIPELI300
QPSKEDIINV  VSSYLENPSK  VNSMRENLSL  LREKLGPENA  TERIADFIEN  ILKSG355

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help