CAZyme3D

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Entry ID

Information for CAZyme ID: AGB39584.1

Basic Information

GenBank IDAGB39584.1
FamilyGT4
Sequence Length329
UniProt IDL0K5C8(100,100)Download
Average pLDDT?90.23
CAZy50 ID142692
CAZy50 RepYes, AGB39584.1
Structure ClusterSC_GT4_clus390
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID694430
KingdomArchaea
PhylumEuryarchaeota
ClassHalobacteria
OrderNatrialbales
FamilyNatrialbaceae
GenusNatronococcus
SpeciesNatronococcus occultus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHVLHLITTT  RSFFEQQISV  LEDRGIDCTV  IGVPGEYTAD  SPRTATDYLR  FYPKVLSHVR60
ADDYDLVHGH  YGLVAPFALA  QPTRPVVMSL  WGTDLMSDMG  WLETISRYGA  RFADATIVPS120
SAMSRELDVD  HVEIPFGIDT  DLFRPISREQ  ARDRVGWDAD  ERIALFPYDP  DRDEKDYPRA180
RRIADRAETE  LEVKTIEGIP  YEEMPYYMNA  SDLLLVTSKY  EAGPMAVKEA  AACNVPIVST240
DVGFVEETIG  GLDTCVVSDD  DGELAAGLDS  ILAGSRRSNA  REAIDGLSLE  SMGDRLVECY300
RGVLEQRGRD  TTELSAEQTE  DREETYHGV329

Predicted 3D structure by AlphaFold2 with pLDDT = 90.23 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MHVLHLITTT  RSFFEQQISV  LEDRGIDCTV  IGVPGEYTAD  SPRTATDYLR  FYPKVLSHVR60
ADDYDLVHGH  YGLVAPFALA  QPTRPVVMSL  WGTDLMSDMG  WLETISRYGA  RFADATIVPS120
SAMSRELDVD  HVEIPFGIDT  DLFRPISREQ  ARDRVGWDAD  ERIALFPYDP  DRDEKDYPRA180
RRIADRAETE  LEVKTIEGIP  YEEMPYYMNA  SDLLLVTSKY  EAGPMAVKEA  AACNVPIVST240
DVGFVEETIG  GLDTCVVSDD  DGELAAGLDS  ILAGSRRSNA  REAIDGLSLE  SMGDRLVECY300
RGVLEQRGRD  TTELSAEQTE  DREETYHGV329

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(173-276)

MHVLHLITTT  RSFFEQQISV  LEDRGIDCTV  IGVPGEYTAD  SPRTATDYLR  FYPKVLSHVR60
ADDYDLVHGH  YGLVAPFALA  QPTRPVVMSL  WGTDLMSDMG  WLETISRYGA  RFADATIVPS120
SAMSRELDVD  HVEIPFGIDT  DLFRPISREQ  ARDRVGWDAD  ERIALFPYDP  DRDEKDYPRA180
RRIADRAETE  LEVKTIEGIP  YEEMPYYMNA  SDLLLVTSKY  EAGPMAVKEA  AACNVPIVST240
DVGFVEETIG  GLDTCVVSDD  DGELAAGLDS  ILAGSRRSNA  REAIDGLSLE  SMGDRLVECY300
RGVLEQRGRD  TTELSAEQTE  DREETYHGV329

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help