CAZyme3D

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Entry ID

Information for CAZyme ID: AGB28636.1

Basic Information

GenBank IDAGB28636.1
FamilyGH2
Sequence Length799
UniProt IDF9D2V9(100,100)Download
Average pLDDT?93.17
CAZy50 ID26635
CAZy50 RepNo, QGA23305.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID908937
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusPrevotella
SpeciesPrevotella dentalis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRLSGLLFLW  LLLAFPKTVT  EACGQVITLN  GEWQLSYWKQ  PAAPVRSPEG  MQRMAAKSIP60
ATVPGNVELD  LLRAGLIKDP  MIGNHVNELR  QWEGYEWCFN  RRFITPQLRG  DQRVNLSLLG120
VDCLADIWLN  SRHIGSVANM  MIEHAFDITD  VLNRDGTDNT  LQIIIRSATL  EGQNRLLGTF180
SIGGFASEES  AYIRKAPHTF  GWDILPRLVS  AGLWRNVELR  VVQPVRFRNV  HYYVSQIDTA240
SRHVQLFADV  QVAMPMEQFD  HVRARLSLSR  HGKVAYTLEQ  PVVTPAFRCQ  WSLEHADLWW300
PRGYGEPALY  DVKAELVDEK  GRVLASDRQR  LGLRTVCLDL  NDMHSDSSPG  RFRFFVNDEP360
VFIHGTNWVP  LDALHSRDTM  HVDKMMDMVA  DLNINMIRCW  GGNVYEDHHF  FDRCDELGVL420
VWQDFAMGCN  FYPQRDDFAR  AVEEEVQSVV  VKLRNHPSLA  LWSGNNENDM  IAYQTLRNFH480
FDPNRDRISR  EVIPRVLYEF  DLTRPYLPSS  PYYSEAVYRH  GGGDSLLPEN  HLWGPRGYYK540
DAFYRNATAV  FCSEIGYHGC  PCVESLQQMF  SKDCVYPWTR  DFEWNDEWVT  KSVRRFPVWG600
KTYNRNNLML  NQIRCVFGDV  PRKLDDFVYA  SQSVQAEAMK  YFLEMWRGRK  FDDKSGIIWW660
NLRDGWPLLS  DAIVDYYFRK  KRAYDYLRHA  ERDICLFVND  AASGSLALMA  VNDTRSEVRG720
EVTVSDVESG  KHVFQGRFHI  PRNGKALVTT  LPEPHGQGVY  LIRYAVGGRT  YGNHFLYGKP780
PYVLSDYRRW  MEKSRLYGQ799

Predicted 3D structure by AlphaFold2 with pLDDT = 93.17 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(21-737)

MRLSGLLFLW  LLLAFPKTVT  EACGQVITLN  GEWQLSYWKQ  PAAPVRSPEG  MQRMAAKSIP60
ATVPGNVELD  LLRAGLIKDP  MIGNHVNELR  QWEGYEWCFN  RRFITPQLRG  DQRVNLSLLG120
VDCLADIWLN  SRHIGSVANM  MIEHAFDITD  VLNRDGTDNT  LQIIIRSATL  EGQNRLLGTF180
SIGGFASEES  AYIRKAPHTF  GWDILPRLVS  AGLWRNVELR  VVQPVRFRNV  HYYVSQIDTA240
SRHVQLFADV  QVAMPMEQFD  HVRARLSLSR  HGKVAYTLEQ  PVVTPAFRCQ  WSLEHADLWW300
PRGYGEPALY  DVKAELVDEK  GRVLASDRQR  LGLRTVCLDL  NDMHSDSSPG  RFRFFVNDEP360
VFIHGTNWVP  LDALHSRDTM  HVDKMMDMVA  DLNINMIRCW  GGNVYEDHHF  FDRCDELGVL420
VWQDFAMGCN  FYPQRDDFAR  AVEEEVQSVV  VKLRNHPSLA  LWSGNNENDM  IAYQTLRNFH480
FDPNRDRISR  EVIPRVLYEF  DLTRPYLPSS  PYYSEAVYRH  GGGDSLLPEN  HLWGPRGYYK540
DAFYRNATAV  FCSEIGYHGC  PCVESLQQMF  SKDCVYPWTR  DFEWNDEWVT  KSVRRFPVWG600
KTYNRNNLML  NQIRCVFGDV  PRKLDDFVYA  SQSVQAEAMK  YFLEMWRGRK  FDDKSGIIWW660
NLRDGWPLLS  DAIVDYYFRK  KRAYDYLRHA  ERDICLFVND  AASGSLALMA  VNDTRSEVRG720
EVTVSDVESG  KHVFQGRFHI  PRNGKALVTT  LPEPHGQGVY  LIRYAVGGRT  YGNHFLYGKP780
PYVLSDYRRW  MEKSRLYGQ799

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help