CAZyme3D

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Entry ID

Information for CAZyme ID: AGB26425.1

Basic Information

GenBank IDAGB26425.1
FamilyGH178
Sequence Length356
UniProt IDL0J4F0(100,100)Download
Average pLDDT?94.30
CAZy50 ID87582
CAZy50 RepNo, ADP78098.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID212767
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycobacterium
SpeciesMycobacterium sp. JS623

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLSPEVPGVP  GVLTPAQCRQ  TAQSIAETQE  PSGAIPWFDG  GHTDPWDHVE  NAMALTVAGL60
LEPARAAFNW  CRHMQRADGS  WPIQLRKGVV  EDANSDSNFC  AYIATGVWHH  VLITRDQAFA120
ETMWPVVAKA  IDFVVDLQTS  GGEISWARSS  SGPEPEALLT  GCASIYHSVR  CALALADYCD180
DPQPEWEVAV  GQLGHAIAHH  PEAFVTKDRW  SMEWYYPVLG  GALQGSAARE  RIDERWDDFV240
VPGLGIRCVD  DRPWVTGAET  CELVMALDAI  GDSARAHEQF  AAMHHLREED  GSYWTGLVYA300
DGKRWPVERT  TWTGAAMILA  ADALSRTTAA  NGIFRGVDLP  RGLEGEYDCA  CATSDR356

Predicted 3D structure by AlphaFold2 with pLDDT = 94.30 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MLSPEVPGVP  GVLTPAQCRQ  TAQSIAETQE  PSGAIPWFDG  GHTDPWDHVE  NAMALTVAGL60
LEPARAAFNW  CRHMQRADGS  WPIQLRKGVV  EDANSDSNFC  AYIATGVWHH  VLITRDQAFA120
ETMWPVVAKA  IDFVVDLQTS  GGEISWARSS  SGPEPEALLT  GCASIYHSVR  CALALADYCD180
DPQPEWEVAV  GQLGHAIAHH  PEAFVTKDRW  SMEWYYPVLG  GALQGSAARE  RIDERWDDFV240
VPGLGIRCVD  DRPWVTGAET  CELVMALDAI  GDSARAHEQF  AAMHHLREED  GSYWTGLVYA300
DGKRWPVERT  TWTGAAMILA  ADALSRTTAA  NGIFRGVDLP  RGLEGEYDCA  CATSDR356

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help