CAZyme3D

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Entry ID

Information for CAZyme ID: AGB05209.1

Basic Information

GenBank IDAGB05209.1
FamilyGT2
Sequence Length655
UniProt IDL0HQ60(100,100)Download
Average pLDDT?84.54
CAZy50 ID44516
CAZy50 RepYes, AGB05209.1
Structure ClusterSC_GT2_clus100
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID673860
KingdomArchaea
PhylumCandidatus Thermoplasmatota
Class
Order
Family
GenusCandidatus Aciduliprofundum
SpeciesAciduliprofundum sp. MAR08-339

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRVRNLTLFL  IPVILAIIFS  LIVGVRNPAI  ILAFFIIFDA  VSSVISSFIF  ITYWHKSKKY60
KELLVSYLKP  RGGVEGKIAI  VIPVYNEDPW  TVVQTAVAAK  MAAEGYGDVY  VLDDSTDDEI120
RKKLDEYAKE  YEFIVFRRGS  RKGYKAGAVN  SWLRKHGESY  DFMMILDADQ  RPMPGFAKHI180
LSMFDDPDVA  FVQVPQYYSR  LDTTIALAAH  LQLIPFLRVV  MRARHINHSA  FSLGSGTVFR240
IKPLMEVGGL  YEKTVTEDIY  TSILLHEKGY  KSKYLDIPLV  WYGEAPLDLK  AYWIQQNRWS300
AGGFQLIPKL  LDAKLSTRQL  VDYMNGVFYW  LHVGLLTMID  IIAPVLFLIF  GIYFMSVEPL360
YYLVFYGSIF  AFTFIFYILS  MRDYKYGLRE  YMYHQGIQFV  ASLPVTIALF  QWLTGRKKSF420
RVTPKKKKMG  DVVRYHIYFM  TVIVMLSLSI  VFGVLKLIYG  QWHMLYAYLI  NMFWAVWWLW480
LSISAFYVSL  SRPVPKRVRE  RARQTYEGLE  ITVVDMLACG  IEFEKLIGRY  YVTLANMYPK540
YEKVLIDIAK  DSFRHARIYE  KILNLAKERW  GKSMEEQCSG  ISSYLKNIED  MEKRCGRIPF600
KECLLPQEEI  SMYVYAHLVL  ESCRFIPKKL  MDEVEGIARE  ELDHNRRIRE  LATGE655

Predicted 3D structure by AlphaFold2 with pLDDT = 84.54 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRVRNLTLFL  IPVILAIIFS  LIVGVRNPAI  ILAFFIIFDA  VSSVISSFIF  ITYWHKSKKY60
KELLVSYLKP  RGGVEGKIAI  VIPVYNEDPW  TVVQTAVAAK  MAAEGYGDVY  VLDDSTDDEI120
RKKLDEYAKE  YEFIVFRRGS  RKGYKAGAVN  SWLRKHGESY  DFMMILDADQ  RPMPGFAKHI180
LSMFDDPDVA  FVQVPQYYSR  LDTTIALAAH  LQLIPFLRVV  MRARHINHSA  FSLGSGTVFR240
IKPLMEVGGL  YEKTVTEDIY  TSILLHEKGY  KSKYLDIPLV  WYGEAPLDLK  AYWIQQNRWS300
AGGFQLIPKL  LDAKLSTRQL  VDYMNGVFYW  LHVGLLTMID  IIAPVLFLIF  GIYFMSVEPL360
YYLVFYGSIF  AFTFIFYILS  MRDYKYGLRE  YMYHQGIQFV  ASLPVTIALF  QWLTGRKKSF420
RVTPKKKKMG  DVVRYHIYFM  TVIVMLSLSI  VFGVLKLIYG  QWHMLYAYLI  NMFWAVWWLW480
LSISAFYVSL  SRPVPKRVRE  RARQTYEGLE  ITVVDMLACG  IEFEKLIGRY  YVTLANMYPK540
YEKVLIDIAK  DSFRHARIYE  KILNLAKERW  GKSMEEQCSG  ISSYLKNIED  MEKRCGRIPF600
KECLLPQEEI  SMYVYAHLVL  ESCRFIPKKL  MDEVEGIARE  ELDHNRRIRE  LATGE655

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(77-302)+GT2(246-479)

MRVRNLTLFL  IPVILAIIFS  LIVGVRNPAI  ILAFFIIFDA  VSSVISSFIF  ITYWHKSKKY60
KELLVSYLKP  RGGVEGKIAI  VIPVYNEDPW  TVVQTAVAAK  MAAEGYGDVY  VLDDSTDDEI120
RKKLDEYAKE  YEFIVFRRGS  RKGYKAGAVN  SWLRKHGESY  DFMMILDADQ  RPMPGFAKHI180
LSMFDDPDVA  FVQVPQYYSR  LDTTIALAAH  LQLIPFLRVV  MRARHINHSA  FSLGSGTVFR240
IKPLMEVGGL  YEKTVTEDIY  TSILLHEKGY  KSKYLDIPLV  WYGEAPLDLK  AYWIQQNRWS300
AGGFQLIPKL  LDAKLSTRQL  VDYMNGVFYW  LHVGLLTMID  IIAPVLFLIF  GIYFMSVEPL360
YYLVFYGSIF  AFTFIFYILS  MRDYKYGLRE  YMYHQGIQFV  ASLPVTIALF  QWLTGRKKSF420
RVTPKKKKMG  DVVRYHIYFM  TVIVMLSLSI  VFGVLKLIYG  QWHMLYAYLI  NMFWAVWWLW480
LSISAFYVSL  SRPVPKRVRE  RARQTYEGLE  ITVVDMLACG  IEFEKLIGRY  YVTLANMYPK540
YEKVLIDIAK  DSFRHARIYE  KILNLAKERW  GKSMEEQCSG  ISSYLKNIED  MEKRCGRIPF600
KECLLPQEEI  SMYVYAHLVL  ESCRFIPKKL  MDEVEGIARE  ELDHNRRIRE  LATGE655

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help