CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: AGA56364.1

Basic Information

GenBank IDAGA56364.1
FamilyGH36, GH38
Sequence Length952
UniProt IDL0E9P6(100,100)Download
Average pLDDT?82.06
CAZy50 ID16548
CAZy50 RepYes, AGA56364.1
Structure ClusterSC_GH36_clus93, SC_GH38_clus116
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID717605
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusThermobacillus
SpeciesThermobacillus composti

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKDKQLYMIG  NAHLDPVWLW  QWQEGFQEAK  ATFRSALDRM  KEYDDFVFTS  SSAAMYEWVE60
RSDPAMFEEI  RQRVKEGRWV  IVGGWWIQPD  CNIPGGESFV  RQGLYGQRYF  KEKFGVTAKV120
GYNVDSFGHN  GMLPQILKKS  GMDYYVMMRP  MPNEKGLPGR  LFRWRSDDGS  EVLTFRIMYE180
YLSWGKDLEN  HVRRVLGEFK  EPLNDLMFFY  GVGNHGGGPT  KENIESIRRL  NGREDLPKLV240
FAAPDRYFRD  MENKGLDLPV  VHGDLQHHAS  GCYAAHSGIK  QWNRRAENKL  IAAEKFSALA300
YWLTGQPYPA  AELKQAWKNV  LFNQFHDILA  GTSIEPAYED  ALYLYGEAMA  IGDRALNYAI360
QSLSWRIGIE  QDESMLPIVV  FNPHAWASRV  NVELEVGGIK  PNAVLLDDQG  RPVPFQTVKS420
LAAARGRFRL  SFMADLPPMG  YRVYKLVKES  ESIRPVGETL  AFVLGGGENP  YLLPERNVTL480
ALRHLNGQTL  PRNAKVYPEI  LDYLGWCSWD  AFYHEVDEKG  LLAKAEELQR  LGLPVRWVMI540
DDGWSEVRDR  KLYGMDADPV  KFPRGLAHTI  EALKRQYGIR  WVGVWHTIAG  YWNGIHPDSG600
MAHELRENLY  VTRRGNVIPH  PDAGRGFGFW  HAWHGYLARQ  GGDFVKVDSQ  SAVHNFLRHH660
LPIGQAASAA  HTALEASAAL  HFDRTIINCM  GMSAENIWHR  PVSAVSRNSD  DFVPQERHGF720
REHALQNAYN  SYYHGAWYWG  DWDMFWTENH  DDVQNMVLRA  VSGGPVYFSD  ALVRTDPARV780
RPLIYRVKAA  AVRENGGAAR  PLPSFGASAA  GQHPVLRHPH  GPGTDRFHTG  DRAGQLHSRA840
SGIGISGRHG  GRAVRLLQAA  SRCGARPDAA  TCRFGQRDPA  QPAFAAHLRR  AVRHAAFHSA900
RSGRSVGRGG  PACGGRTGHR  EGPSVRGPML  DIRLRRMTGG  GIHPCAAPIF  MV952

Predicted 3D structure by AlphaFold2 with pLDDT = 82.06 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKDKQLYMIG  NAHLDPVWLW  QWQEGFQEAK  ATFRSALDRM  KEYDDFVFTS  SSAAMYEWVE60
RSDPAMFEEI  RQRVKEGRWV  IVGGWWIQPD  CNIPGGESFV  RQGLYGQRYF  KEKFGVTAKV120
GYNVDSFGHN  GMLPQILKKS  GMDYYVMMRP  MPNEKGLPGR  LFRWRSDDGS  EVLTFRIMYE180
YLSWGKDLEN  HVRRVLGEFK  EPLNDLMFFY  GVGNHGGGPT  KENIESIRRL  NGREDLPKLV240
FAAPDRYFRD  MENKGLDLPV  VHGDLQHHAS  GCYAAHSGIK  QWNRRAENKL  IAAEKFSALA300
YWLTGQPYPA  AELKQAWKNV  LFNQFHDILA  GTSIEPAYED  ALYLYGEAMA  IGDRALNYAI360
QSLSWRIGIE  QDESMLPIVV  FNPHAWASRV  NVELEVGGIK  PNAVLLDDQG  RPVPFQTVKS420
LAAARGRFRL  SFMADLPPMG  YRVYKLVKES  ESIRPVGETL  AFVLGGGENP  YLLPERNVTL480
ALRHLNGQTL  PRNAKVYPEI  LDYLGWCSWD  AFYHEVDEKG  LLAKAEELQR  LGLPVRWVMI540
DDGWSEVRDR  KLYGMDADPV  KFPRGLAHTI  EALKRQYGIR  WVGVWHTIAG  YWNGIHPDSG600
MAHELRENLY  VTRRGNVIPH  PDAGRGFGFW  HAWHGYLARQ  GGDFVKVDSQ  SAVHNFLRHH660
LPIGQAASAA  HTALEASAAL  HFDRTIINCM  GMSAENIWHR  PVSAVSRNSD  DFVPQERHGF720
REHALQNAYN  SYYHGAWYWG  DWDMFWTENH  DDVQNMVLRA  VSGGPVYFSD  ALVRTDPARV780
RPLIYRVKAA  AVRENGGAAR  PLPSFGASAA  GQHPVLRHPH  GPGTDRFHTG  DRAGQLHSRA840
SGIGISGRHG  GRAVRLLQAA  SRCGARPDAA  TCRFGQRDPA  QPAFAAHLRR  AVRHAAFHSA900
RSGRSVGRGG  PACGGRTGHR  EGPSVRGPML  DIRLRRMTGG  GIHPCAAPIF  MV952

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH38(6-256)

MKDKQLYMIG  NAHLDPVWLW  QWQEGFQEAK  ATFRSALDRM  KEYDDFVFTS  SSAAMYEWVE60
RSDPAMFEEI  RQRVKEGRWV  IVGGWWIQPD  CNIPGGESFV  RQGLYGQRYF  KEKFGVTAKV120
GYNVDSFGHN  GMLPQILKKS  GMDYYVMMRP  MPNEKGLPGR  LFRWRSDDGS  EVLTFRIMYE180
YLSWGKDLEN  HVRRVLGEFK  EPLNDLMFFY  GVGNHGGGPT  KENIESIRRL  NGREDLPKLV240
FAAPDRYFRD  MENKGLDLPV  VHGDLQHHAS  GCYAAHSGIK  QWNRRAENKL  IAAEKFSALA300
YWLTGQPYPA  AELKQAWKNV  LFNQFHDILA  GTSIEPAYED  ALYLYGEAMA  IGDRALNYAI360
QSLSWRIGIE  QDESMLPIVV  FNPHAWASRV  NVELEVGGIK  PNAVLLDDQG  RPVPFQTVKS420
LAAARGRFRL  SFMADLPPMG  YRVYKLVKES  ESIRPVGETL  AFVLGGGENP  YLLPERNVTL480
ALRHLNGQTL  PRNAKVYPEI  LDYLGWCSWD  AFYHEVDEKG  LLAKAEELQR  LGLPVRWVMI540
DDGWSEVRDR  KLYGMDADPV  KFPRGLAHTI  EALKRQYGIR  WVGVWHTIAG  YWNGIHPDSG600
MAHELRENLY  VTRRGNVIPH  PDAGRGFGFW  HAWHGYLARQ  GGDFVKVDSQ  SAVHNFLRHH660
LPIGQAASAA  HTALEASAAL  HFDRTIINCM  GMSAENIWHR  PVSAVSRNSD  DFVPQERHGF720
REHALQNAYN  SYYHGAWYWG  DWDMFWTENH  DDVQNMVLRA  VSGGPVYFSD  ALVRTDPARV780
RPLIYRVKAA  AVRENGGAAR  PLPSFGASAA  GQHPVLRHPH  GPGTDRFHTG  DRAGQLHSRA840
SGIGISGRHG  GRAVRLLQAA  SRCGARPDAA  TCRFGQRDPA  QPAFAAHLRR  AVRHAAFHSA900
RSGRSVGRGG  PACGGRTGHR  EGPSVRGPML  DIRLRRMTGG  GIHPCAAPIF  MV952

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help