CAZyme3D

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Entry ID

Information for CAZyme ID: AFS54369.1

Basic Information

GenBank IDAFS54369.1
FamilyGT1
Sequence Length359
UniProt IDJ9ZDC2(100,100)Download
Average pLDDT?91.44
CAZy50 ID126709
CAZy50 RepYes, AFS54369.1
Structure ClusterSC_GT1_clus419
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1048260
KingdomBacteria
PhylumNitrospirota
ClassNitrospiria
OrderNitrospirales
FamilyNitrospiraceae
GenusLeptospirillum
SpeciesLeptospirillum ferriphilum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRVLFYASNG  LGIGHLTRLL  NIAQALSKAS  PTSEILFLTQ  SEAAPFPETC  PFYAIRIPGR60
NKARTGGLTS  KSYLQTVRPL  ILQAIASFDP  HVLVTDTFPE  GPEKELAPAM  EWPIHKAFIF120
REQHIRRAED  PSLNQVLRRY  HRILVPHDKD  SIPLPSFLKS  DPRLSWTGPV  LPTDPLFSRE180
EARKRLGIPE  HQETVLLSFG  GGGDPEAKQR  AKDIAAFFRE  KNRSFFYASG  PLLRSLPEGI240
RAGEWLPLWP  IRPYLKAFDA  VVASGGYNTV  HEILESRVPA  FLCGFPRVLD  PQSDRIDRLV300
REGRVMTHSG  QTLSDLLCSL  ETFLEKRILL  SESLKTQSTP  VSSGADTAAR  ILLNILQPA359

Predicted 3D structure by AlphaFold2 with pLDDT = 91.44 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRVLFYASNG  LGIGHLTRLL  NIAQALSKAS  PTSEILFLTQ  SEAAPFPETC  PFYAIRIPGR60
NKARTGGLTS  KSYLQTVRPL  ILQAIASFDP  HVLVTDTFPE  GPEKELAPAM  EWPIHKAFIF120
REQHIRRAED  PSLNQVLRRY  HRILVPHDKD  SIPLPSFLKS  DPRLSWTGPV  LPTDPLFSRE180
EARKRLGIPE  HQETVLLSFG  GGGDPEAKQR  AKDIAAFFRE  KNRSFFYASG  PLLRSLPEGI240
RAGEWLPLWP  IRPYLKAFDA  VVASGGYNTV  HEILESRVPA  FLCGFPRVLD  PQSDRIDRLV300
REGRVMTHSG  QTLSDLLCSL  ETFLEKRILL  SESLKTQSTP  VSSGADTAAR  ILLNILQPA359

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT1(97-303)

MRVLFYASNG  LGIGHLTRLL  NIAQALSKAS  PTSEILFLTQ  SEAAPFPETC  PFYAIRIPGR60
NKARTGGLTS  KSYLQTVRPL  ILQAIASFDP  HVLVTDTFPE  GPEKELAPAM  EWPIHKAFIF120
REQHIRRAED  PSLNQVLRRY  HRILVPHDKD  SIPLPSFLKS  DPRLSWTGPV  LPTDPLFSRE180
EARKRLGIPE  HQETVLLSFG  GGGDPEAKQR  AKDIAAFFRE  KNRSFFYASG  PLLRSLPEGI240
RAGEWLPLWP  IRPYLKAFDA  VVASGGYNTV  HEILESRVPA  FLCGFPRVLD  PQSDRIDRLV300
REGRVMTHSG  QTLSDLLCSL  ETFLEKRILL  SESLKTQSTP  VSSGADTAAR  ILLNILQPA359

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help