CAZyme3D

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Entry ID

Information for CAZyme ID: AFS14466.1

Basic Information

GenBank IDAFS14466.1
FamilyGH178
Sequence Length358
UniProt IDJ9WGP8(100,100)Download
Average pLDDT?94.14
CAZy50 ID87582
CAZy50 RepNo, ADP78098.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1232724
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycobacterium
SpeciesMycobacterium intracellulare

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQRSNLPAVA  GVLTPEQCRQ  TALSIAAAQE  SSGAIPWFEG  GHTDPWDHVE  CAMALTTAGL60
LEPARAAFDW  SRRTQRSDGS  WPIQFRAGVI  EDANSDSNFC  AYIAAGVWHH  VLVTGDASFA120
ADMWPAVRKA  IDFVIDMQVG  NGEIAWARSE  AGLLPEALLT  GCSSVYHSIR  CALALAAFVE180
DPQPEWELAV  GRLGHAITDH  PEAFTEKERY  SMDWYYPILG  SALRGPAADA  RIKQRWEDFV240
VDGLGIRCVG  DRPWVTGAET  CELVMALDAL  GHRSEAHRQF  AAMQHLRESD  GSYWTGLVFA300
DGKRWPEERT  TWTGAAMILA  ADALSNATAG  AGIFRGDALP  MGLQTDFDCE  CVATGPGR358

Predicted 3D structure by AlphaFold2 with pLDDT = 94.14 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MQRSNLPAVA  GVLTPEQCRQ  TALSIAAAQE  SSGAIPWFEG  GHTDPWDHVE  CAMALTTAGL60
LEPARAAFDW  SRRTQRSDGS  WPIQFRAGVI  EDANSDSNFC  AYIAAGVWHH  VLVTGDASFA120
ADMWPAVRKA  IDFVIDMQVG  NGEIAWARSE  AGLLPEALLT  GCSSVYHSIR  CALALAAFVE180
DPQPEWELAV  GRLGHAITDH  PEAFTEKERY  SMDWYYPILG  SALRGPAADA  RIKQRWEDFV240
VDGLGIRCVG  DRPWVTGAET  CELVMALDAL  GHRSEAHRQF  AAMQHLRESD  GSYWTGLVFA300
DGKRWPEERT  TWTGAAMILA  ADALSNATAG  AGIFRGDALP  MGLQTDFDCE  CVATGPGR358

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help