CAZyme3D

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Entry ID

Information for CAZyme ID: AFO68119.1

Basic Information

GenBank IDAFO68119.1
FamilyCBM47
Sequence Length243
UniProt IDM1FAC3(100,100)Download
Average pLDDT?71.04
CAZy50 ID173643
CAZy50 RepYes, AFO68119.1
Structure ClusterSC_CBM47_clus7
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID79674
KingdomEukaryota
PhylumArthropoda
ClassMalacostraca
OrderDecapoda
FamilyPalaemonidae
GenusMacrobrachium
SpeciesMacrobrachium rosenbergii
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/M1FAC3.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MASSSVNPGV  AAVILVALAV  AVEPQGVFDV  MVIRQNELLH  LVKGHEEMLN  SIKDECVLTK60
QLELLELKIN  AGLGCLGRGP  ERNIPIGNLP  ANYGMPSPDM  LHDIAPGKTT  SSSGIHGEHH120
PRRAIDSGDE  SMFHSLQERH  PWWLIDLGSE  RVIYHIMILS  RRDCCSARLH  DLEIRLGNNL180
RTDGDFSSFD  LLYFYKGPYT  KDDGFLMYTF  AQGVKGRYLS  LQIVAEEPEF  LQLNTVKVIG240
LRN243

Predicted 3D structure by AlphaFold2 with pLDDT = 71.04 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MASSSVNPGV  AAVILVALAV  AVEPQGVFDV  MVIRQNELLH  LVKGHEEMLN  SIKDECVLTK60
QLELLELKIN  AGLGCLGRGP  ERNIPIGNLP  ANYGMPSPDM  LHDIAPGKTT  SSSGIHGEHH120
PRRAIDSGDE  SMFHSLQERH  PWWLIDLGSE  RVIYHIMILS  RRDCCSARLH  DLEIRLGNNL180
RTDGDFSSFD  LLYFYKGPYT  KDDGFLMYTF  AQGVKGRYLS  LQIVAEEPEF  LQLNTVKVIG240
LRN243

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM47(113-235)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help