Basic information |
Taxonomy |
Protein Sequence |
Structure visualization |
Binding Residues |
dbCAN domains |
Homology within Cluster
Information for CAZyme ID: AFK54208.1
Basic Information
| GenBank ID | AFK54208.1 |
| Family | GH18 |
| Sequence Length | 1388 |
| UniProt ID | I3TN70(100,100) |
| Average pLDDT? | 77.96 |
| CAZy50 ID | 5037 |
| CAZy50 Rep | Yes, AFK54208.1 |
| Structure Cluster | SC_GH18_clus437 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1110502 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Geminicoccales |
| Family | Geminicoccaceae |
| Genus | Tistrella |
| Species | Tistrella mobilis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MAVTVVSTLT LALGGLSGAS THSLDATGAD LIVALVPIAY YDPVEVGTTW DHIPTITFGG | 60 |
| QALTPVHSAP LVAEMDYGTV VLYVLPSPPP GVHDLVVLTP YWMGYISPVV WVLAGTSGRL | 120 |
| SPLAVSVAEV AGGDVLATPA VQAPAGGLVL AAAASYWYTG SPDISAPAGW TATGAATGSY | 180 |
| ERIFGFTAPA PAEGDGIALE VTQSDWGTAL ALAAVTVEPY GLPRDEVLVT AAEVYYAGQI | 240 |
| DQAQAGGVFN PGAGSGSTPA PPAIIDTTGA DLLLVGVLYT HTDPAPTLTY AGRLLRYLDD | 300 |
| PAPAVPEAGK LRIAYLANPP AGSHELLAAA WDRFVGIVVL HAVAVSGCSG VAGIRLAAIS | 360 |
| VDNPTRIRVP YTHRSSRVLA MSATPWGGAA ELAAAGWTAE ASAQGTYAGG WLWSRQGGGC | 420 |
| APLVIDRSVA YATQLIAVVE IEAGWPSADI DGTADLALPP VRADHLRAEH YRPRPDGQIV | 480 |
| AVYYETWMDA PASDAPADLD AMRLMAIPPE VDIVYLHTAL PQCTYSGLDD DIQTTVGILW | 540 |
| PGPVSLLKAA LDRFRASHPR TKIMLVVMQL GPGYTWLPEP YDPAGFGGQT EAHMAALRQL | 600 |
| VDDLGLDGVD VDYELMSQVN DLAHHCWTDE DGVRRCYTDA ELVEVIKRFR RWFPRPFILS | 660 |
| WAGVHVGCYG EPPFQRAAPA GGGWNGGYAL ALARDAEASA ALDHINIMTY DAGTDYDPAE | 720 |
| AFAAYRHWFP ATTLLIGLRA GPPEWGLEPP YEHTGAKRSI ADFRGYLAHV IGDNDAGAFI | 780 |
| YGWNWDAYQP TAATYSASGA YDDDYPDGEM AVATAIGALD RGYVPPAHPR TTVDRVVTIE | 840 |
| LRPRDLTAEA PAQTLLAPWA AQAWATLPSA DERRDDGLAV LRFADKPMTT GPADLPAHSW | 900 |
| WDGRATSPLS IERGIPIAPE ASDRTSVELG RVELANADGT LDDVPERYDL GGRQVIVRAL | 960 |
| HRDLPGWRHS GAALLFDGLG AAWEADRQAL ALTVEGQAAW ADKPLQSRLY AGTGEAEGGE | 1020 |
| DLAGKPLPVL FGRVRNIEPV LVDPIGIYQA HHRQMRSVLA VRDKGFAVEP SGLDFASFGA | 1080 |
| LKAAAVPAGT YATCLAGGYL RLGTYPPVGV LTCDADGDAV GGWAATTADI LLRLLVDHAA | 1140 |
| VDLSRIDLEA VAGLAVAVPG VIGWYQGTET ATVGEVIDRI TRAAGAWWGS DGQGLVEVGR | 1200 |
| LALPRVTPDY VLDHTIILET PERLDLPDSI AQPSWRRRVG WRRNWRVQGA ADLPEAPVEP | 1260 |
| ALPREFLSEE WRLATSVDTS LLADRLRAID ADVIEACFDG QADAQALADH LLALYGRPAL | 1320 |
| ALSVTVPPLL AEEVVDGAPT VRRAVRIGST IRVTYPRYGL SAGRNLVLVG VSEDWAAGRW | 1380 |
| VLTLWGPS | 1388 |
Predicted 3D structure by AlphaFold2 with pLDDT = 77.96 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MAVTVVSTLT LALGGLSGAS THSLDATGAD LIVALVPIAY YDPVEVGTTW DHIPTITFGG | 60 |
| QALTPVHSAP LVAEMDYGTV VLYVLPSPPP GVHDLVVLTP YWMGYISPVV WVLAGTSGRL | 120 |
| SPLAVSVAEV AGGDVLATPA VQAPAGGLVL AAAASYWYTG SPDISAPAGW TATGAATGSY | 180 |
| ERIFGFTAPA PAEGDGIALE VTQSDWGTAL ALAAVTVEPY GLPRDEVLVT AAEVYYAGQI | 240 |
| DQAQAGGVFN PGAGSGSTPA PPAIIDTTGA DLLLVGVLYT HTDPAPTLTY AGRLLRYLDD | 300 |
| PAPAVPEAGK LRIAYLANPP AGSHELLAAA WDRFVGIVVL HAVAVSGCSG VAGIRLAAIS | 360 |
| VDNPTRIRVP YTHRSSRVLA MSATPWGGAA ELAAAGWTAE ASAQGTYAGG WLWSRQGGGC | 420 |
| APLVIDRSVA YATQLIAVVE IEAGWPSADI DGTADLALPP VRADHLRAEH YRPRPDGQIV | 480 |
| AVYYETWMDA PASDAPADLD AMRLMAIPPE VDIVYLHTAL PQCTYSGLDD DIQTTVGILW | 540 |
| PGPVSLLKAA LDRFRASHPR TKIMLVVMQL GPGYTWLPEP YDPAGFGGQT EAHMAALRQL | 600 |
| VDDLGLDGVD VDYELMSQVN DLAHHCWTDE DGVRRCYTDA ELVEVIKRFR RWFPRPFILS | 660 |
| WAGVHVGCYG EPPFQRAAPA GGGWNGGYAL ALARDAEASA ALDHINIMTY DAGTDYDPAE | 720 |
| AFAAYRHWFP ATTLLIGLRA GPPEWGLEPP YEHTGAKRSI ADFRGYLAHV IGDNDAGAFI | 780 |
| YGWNWDAYQP TAATYSASGA YDDDYPDGEM AVATAIGALD RGYVPPAHPR TTVDRVVTIE | 840 |
| LRPRDLTAEA PAQTLLAPWA AQAWATLPSA DERRDDGLAV LRFADKPMTT GPADLPAHSW | 900 |
| WDGRATSPLS IERGIPIAPE ASDRTSVELG RVELANADGT LDDVPERYDL GGRQVIVRAL | 960 |
| HRDLPGWRHS GAALLFDGLG AAWEADRQAL ALTVEGQAAW ADKPLQSRLY AGTGEAEGGE | 1020 |
| DLAGKPLPVL FGRVRNIEPV LVDPIGIYQA HHRQMRSVLA VRDKGFAVEP SGLDFASFGA | 1080 |
| LKAAAVPAGT YATCLAGGYL RLGTYPPVGV LTCDADGDAV GGWAATTADI LLRLLVDHAA | 1140 |
| VDLSRIDLEA VAGLAVAVPG VIGWYQGTET ATVGEVIDRI TRAAGAWWGS DGQGLVEVGR | 1200 |
| LALPRVTPDY VLDHTIILET PERLDLPDSI AQPSWRRRVG WRRNWRVQGA ADLPEAPVEP | 1260 |
| ALPREFLSEE WRLATSVDTS LLADRLRAID ADVIEACFDG QADAQALADH LLALYGRPAL | 1320 |
| ALSVTVPPLL AEEVVDGAPT VRRAVRIGST IRVTYPRYGL SAGRNLVLVG VSEDWAAGRW | 1380 |
| VLTLWGPS | 1388 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.