CAZyme3D

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Entry ID

Information for CAZyme ID: AFK13946.1

Basic Information

GenBank IDAFK13946.1
FamilyGH34
Sequence Length472
UniProt IDM9NIT5(100,100)Download
Average pLDDT?82.57
CAZy50 ID74994
CAZy50 RepYes, AFK13946.1
Structure ClusterSC_GH34_clus4
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1177614
KingdomViruses
PhylumNegarnaviricota
ClassInsthoviricetes
OrderArticulavirales
FamilyOrthomyxoviridae
GenusAlphainfluenzavirus
SpeciesAlphainfluenzavirus influenzae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNPNQKIITI  GSISLGLVVL  NILLHVASIV  LGIISVTKDH  GACICNTTEV  YNETVTVETV60
TIPVNNTIYI  ERELTHEPEF  LNNTEPLCEV  SGFAIVSKDN  GIKIGSRGHV  FLIKEPFVTC120
TPSECRTFFL  TQGALLNDKH  SNNTVKDRSP  HRALMSVPLG  SSPNAYQAKF  ESVGWSATAC180
HDGKEWMAIG  VSGADDDAYA  VIHYGGVPTD  VVRSWRKQIL  ITQESSCVCM  KGECYWVMTD240
GPANKQASYK  IFKSQKGLVV  DEKEISFQGG  DIEECSCYPN  MGKVECVCRD  SWNGMNRPIL300
TLDENLKYEV  GYMCAGIPTD  NPRVQDSSFT  GSCTNAAGGN  GTDNYGVKGI  GCRQGTNVWA360
GRTISIYFRS  GFEVLLIEDG  WIRPSKTICK  KVEVLNSKNW  SGSSGSFTIP  TVVTSKSCGV420
PRFWREMIRG  KPKERISIWT  SSSSTVFCGV  SSKVPGWSWN  DGAMLPSDID  KM472

Predicted 3D structure by AlphaFold2 with pLDDT = 82.57 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNPNQKIITI  GSISLGLVVL  NILLHVASIV  LGIISVTKDH  GACICNTTEV  YNETVTVETV60
TIPVNNTIYI  ERELTHEPEF  LNNTEPLCEV  SGFAIVSKDN  GIKIGSRGHV  FLIKEPFVTC120
TPSECRTFFL  TQGALLNDKH  SNNTVKDRSP  HRALMSVPLG  SSPNAYQAKF  ESVGWSATAC180
HDGKEWMAIG  VSGADDDAYA  VIHYGGVPTD  VVRSWRKQIL  ITQESSCVCM  KGECYWVMTD240
GPANKQASYK  IFKSQKGLVV  DEKEISFQGG  DIEECSCYPN  MGKVECVCRD  SWNGMNRPIL300
TLDENLKYEV  GYMCAGIPTD  NPRVQDSSFT  GSCTNAAGGN  GTDNYGVKGI  GCRQGTNVWA360
GRTISIYFRS  GFEVLLIEDG  WIRPSKTICK  KVEVLNSKNW  SGSSGSFTIP  TVVTSKSCGV420
PRFWREMIRG  KPKERISIWT  SSSSTVFCGV  SSKVPGWSWN  DGAMLPSDID  KM472

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH34(1-466)

MNPNQKIITI  GSISLGLVVL  NILLHVASIV  LGIISVTKDH  GACICNTTEV  YNETVTVETV60
TIPVNNTIYI  ERELTHEPEF  LNNTEPLCEV  SGFAIVSKDN  GIKIGSRGHV  FLIKEPFVTC120
TPSECRTFFL  TQGALLNDKH  SNNTVKDRSP  HRALMSVPLG  SSPNAYQAKF  ESVGWSATAC180
HDGKEWMAIG  VSGADDDAYA  VIHYGGVPTD  VVRSWRKQIL  ITQESSCVCM  KGECYWVMTD240
GPANKQASYK  IFKSQKGLVV  DEKEISFQGG  DIEECSCYPN  MGKVECVCRD  SWNGMNRPIL300
TLDENLKYEV  GYMCAGIPTD  NPRVQDSSFT  GSCTNAAGGN  GTDNYGVKGI  GCRQGTNVWA360
GRTISIYFRS  GFEVLLIEDG  WIRPSKTICK  KVEVLNSKNW  SGSSGSFTIP  TVVTSKSCGV420
PRFWREMIRG  KPKERISIWT  SSSSTVFCGV  SSKVPGWSWN  DGAMLPSDID  KM472

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help