CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: AFK07172.1

Basic Information

GenBank IDAFK07172.1
FamilyGT28
Sequence Length356
UniProt IDI2F5G9(100,100)Download
Average pLDDT?91.23
CAZy50 ID128887
CAZy50 RepYes, AFK07172.1
Structure ClusterSC_GT28_clus36
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID660470
KingdomBacteria
PhylumThermotogota
ClassThermotogae
OrderKosmotogales
FamilyKosmotogaceae
GenusMesotoga
SpeciesMesotoga prima

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKLKIAFCG  GGTGGHYYPA  VAILHALSRV  REIELLYFTV  WGKIDDRSVD  RDFPGVRKMS60
LKLTGLKRPL  YSPANASIFF  SHLRTERSVK  RQLAEFSPDF  LFSTGGYVSY  PVVRAAKSLE120
IPVYIHEQNS  IVGIANKRLA  KYAKRFFISF  EESGRDLELP  KERIVFSGNP  VRESKITRNE180
VMKRFDLPDN  KPLIVVLGGS  LGSELINRAC  EGLYEEIQSN  DCELSFLHST  GDESSAISLR240
RFPFVRAFSY  IEDLTDAIAC  ADLVVSRGGA  TTIAELQYFG  RKGIIIPWSG  AAENHQFYNA300
RSLERVGLGY  VILEENLTST  ALRIAIKEML  HRQISYKPPR  RPVEIVLDNI  LREESI356

Predicted 3D structure by AlphaFold2 with pLDDT = 91.23 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKKLKIAFCG  GGTGGHYYPA  VAILHALSRV  REIELLYFTV  WGKIDDRSVD  RDFPGVRKMS60
LKLTGLKRPL  YSPANASIFF  SHLRTERSVK  RQLAEFSPDF  LFSTGGYVSY  PVVRAAKSLE120
IPVYIHEQNS  IVGIANKRLA  KYAKRFFISF  EESGRDLELP  KERIVFSGNP  VRESKITRNE180
VMKRFDLPDN  KPLIVVLGGS  LGSELINRAC  EGLYEEIQSN  DCELSFLHST  GDESSAISLR240
RFPFVRAFSY  IEDLTDAIAC  ADLVVSRGGA  TTIAELQYFG  RKGIIIPWSG  AAENHQFYNA300
RSLERVGLGY  VILEENLTST  ALRIAIKEML  HRQISYKPPR  RPVEIVLDNI  LREESI356

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT28(194-332)

MKKLKIAFCG  GGTGGHYYPA  VAILHALSRV  REIELLYFTV  WGKIDDRSVD  RDFPGVRKMS60
LKLTGLKRPL  YSPANASIFF  SHLRTERSVK  RQLAEFSPDF  LFSTGGYVSY  PVVRAAKSLE120
IPVYIHEQNS  IVGIANKRLA  KYAKRFFISF  EESGRDLELP  KERIVFSGNP  VRESKITRNE180
VMKRFDLPDN  KPLIVVLGGS  LGSELINRAC  EGLYEEIQSN  DCELSFLHST  GDESSAISLR240
RFPFVRAFSY  IEDLTDAIAC  ADLVVSRGGA  TTIAELQYFG  RKGIIIPWSG  AAENHQFYNA300
RSLERVGLGY  VILEENLTST  ALRIAIKEML  HRQISYKPPR  RPVEIVLDNI  LREESI356

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help