CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: AFH60867.1

Basic Information

GenBank IDAFH60867.1
FamilyCBM30
Sequence Length1265
UniProt IDI0BES0(100,100)Download
Average pLDDT?66.45
CAZy50 ID6677
CAZy50 RepYes, AFH60867.1
Structure ClusterSC_CBM30_clus4
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID997761
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus mucilaginosus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNATASSRVK  RFTYMIKLLL  CTAIVLAGAV  PLSVSASAQP  LPDLVFFGEN  PNTSHWGAEV60
QKENDLLPFD  ASVAFNGHPA  HRVTNVSGGW  WGIGMTLQWT  TRDISGYIPY  GALEFELKGS120
RGGELLQFSL  SDGRSPAAET  GTVPAAASPS  WNHVTIPLAQ  FPQIGSFPAS  AWNTLLITKV180
NGEDLNTLWL  SDMKFTSRYI  TRYEPLNMTA  PQGTVPAMPS  VVTAVYSDST  TTEVPVTWSG240
VPDGSAAGAF  TVQGHVAGVS  VQPTAEVTVG  TEADQGTGSE  EPQPAQETPP  AVETPSPETV300
PSSGQQEHVV  FEGGRTDQYF  GSGGSLKLET  DLVSTSSLPV  DSTVEGTYNG  QPSYKIAVTK360
LADPNWGYWN  GVLAADGWTS  YSLEAFREGT  LEFYVKGAAG  GEDFVIGIMD  TNDVKSVLSL420
SGLAQTVTTD  WSLIRIPLSR  FTEQAPDLEL  SIIDKVVLEN  ASTQGEMSVW  LNRIKFTQNP480
AAELEIASVD  PVKAVTVAGL  PPELPQEVPV  TYENGTTGTA  SVSWEESDGY  RIRGRYTVRG540
TILQDTGPVP  VTAEVTVVRA  LSDEPHVIFL  DKKKAQWASA  EGHFSLGMEQ  ALDDQGMPVT600
NEQGNPVMTL  PVDPQVTFGG  LPAYRLQVTR  IPGPNWGYWG  TGLTMDNWNP  VNLEALYERG660
SLDFMIKGLT  GGESFSVVLT  DRAGALGTVK  LSDVAAVTTG  WRQVSIPLKR  LVPVSSAHRL720
KESTAVTLTS  DTGTGAAPLT  VWLSDMRFTS  EASREVVRFG  TKLTVPASQL  PQLPVLPATA780
EAVYNDGTAE  QVPVAWDAVT  FSSWGYPNPV  QGTAQGIDLP  ATLQFTVEGS  RSSGSSGSGS840
GSGSAGMPEE  PEAPIAVPVV  PAASSLYPNG  AAGTYTLPAL  KPAVDPADAL  LAVVNVQPGA900
LKEGYKAAAP  GPGQRPVMHI  KVPYMSGVTG  YAVKLPAGAV  SGAYPDAELS  VTTDLGRVVL960
PADLLNPDQL  NGAAAIRLVI  RRSDTADMKK  TAREQVGGRT  VLDIHLEADG  VILPWESREK1020
RVLVSPDYAP  TDEELEHPER  LVILYLGEDG  EAEPVPSGRY  DRTGGRMIFS  AGHFSRYAVA1080
WGSRTFGDLA  GYGWAQEAVE  LLASRGIVQG  TGPAEFAPGR  GVTRAEFVSL  LVRTLDLAGL1140
PAEADFRDVD  PSSPHYQAIA  AAARLGIAGG  IGGGLFAPDA  PVSRQDVIVL  TERALERAGR1200
LHAGAADSLP  SGVFRDAEDL  AGYAVPAVSA  LYGAGLIEGA  GGLLRPEAEM  SRAEAAVLLN1260
RIYPY1265

Predicted 3D structure by AlphaFold2 with pLDDT = 66.45 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNATASSRVK  RFTYMIKLLL  CTAIVLAGAV  PLSVSASAQP  LPDLVFFGEN  PNTSHWGAEV60
QKENDLLPFD  ASVAFNGHPA  HRVTNVSGGW  WGIGMTLQWT  TRDISGYIPY  GALEFELKGS120
RGGELLQFSL  SDGRSPAAET  GTVPAAASPS  WNHVTIPLAQ  FPQIGSFPAS  AWNTLLITKV180
NGEDLNTLWL  SDMKFTSRYI  TRYEPLNMTA  PQGTVPAMPS  VVTAVYSDST  TTEVPVTWSG240
VPDGSAAGAF  TVQGHVAGVS  VQPTAEVTVG  TEADQGTGSE  EPQPAQETPP  AVETPSPETV300
PSSGQQEHVV  FEGGRTDQYF  GSGGSLKLET  DLVSTSSLPV  DSTVEGTYNG  QPSYKIAVTK360
LADPNWGYWN  GVLAADGWTS  YSLEAFREGT  LEFYVKGAAG  GEDFVIGIMD  TNDVKSVLSL420
SGLAQTVTTD  WSLIRIPLSR  FTEQAPDLEL  SIIDKVVLEN  ASTQGEMSVW  LNRIKFTQNP480
AAELEIASVD  PVKAVTVAGL  PPELPQEVPV  TYENGTTGTA  SVSWEESDGY  RIRGRYTVRG540
TILQDTGPVP  VTAEVTVVRA  LSDEPHVIFL  DKKKAQWASA  EGHFSLGMEQ  ALDDQGMPVT600
NEQGNPVMTL  PVDPQVTFGG  LPAYRLQVTR  IPGPNWGYWG  TGLTMDNWNP  VNLEALYERG660
SLDFMIKGLT  GGESFSVVLT  DRAGALGTVK  LSDVAAVTTG  WRQVSIPLKR  LVPVSSAHRL720
KESTAVTLTS  DTGTGAAPLT  VWLSDMRFTS  EASREVVRFG  TKLTVPASQL  PQLPVLPATA780
EAVYNDGTAE  QVPVAWDAVT  FSSWGYPNPV  QGTAQGIDLP  ATLQFTVEGS  RSSGSSGSGS840
GSGSAGMPEE  PEAPIAVPVV  PAASSLYPNG  AAGTYTLPAL  KPAVDPADAL  LAVVNVQPGA900
LKEGYKAAAP  GPGQRPVMHI  KVPYMSGVTG  YAVKLPAGAV  SGAYPDAELS  VTTDLGRVVL960
PADLLNPDQL  NGAAAIRLVI  RRSDTADMKK  TAREQVGGRT  VLDIHLEADG  VILPWESREK1020
RVLVSPDYAP  TDEELEHPER  LVILYLGEDG  EAEPVPSGRY  DRTGGRMIFS  AGHFSRYAVA1080
WGSRTFGDLA  GYGWAQEAVE  LLASRGIVQG  TGPAEFAPGR  GVTRAEFVSL  LVRTLDLAGL1140
PAEADFRDVD  PSSPHYQAIA  AAARLGIAGG  IGGGLFAPDA  PVSRQDVIVL  TERALERAGR1200
LHAGAADSLP  SGVFRDAEDL  AGYAVPAVSA  LYGAGLIEGA  GGLLRPEAEM  SRAEAAVLLN1260
RIYPY1265

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM30(67-198)+CBM30(338-479)+CBM30(609-756)+SLH(1146-1186)

MNATASSRVK  RFTYMIKLLL  CTAIVLAGAV  PLSVSASAQP  LPDLVFFGEN  PNTSHWGAEV60
QKENDLLPFD  ASVAFNGHPA  HRVTNVSGGW  WGIGMTLQWT  TRDISGYIPY  GALEFELKGS120
RGGELLQFSL  SDGRSPAAET  GTVPAAASPS  WNHVTIPLAQ  FPQIGSFPAS  AWNTLLITKV180
NGEDLNTLWL  SDMKFTSRYI  TRYEPLNMTA  PQGTVPAMPS  VVTAVYSDST  TTEVPVTWSG240
VPDGSAAGAF  TVQGHVAGVS  VQPTAEVTVG  TEADQGTGSE  EPQPAQETPP  AVETPSPETV300
PSSGQQEHVV  FEGGRTDQYF  GSGGSLKLET  DLVSTSSLPV  DSTVEGTYNG  QPSYKIAVTK360
LADPNWGYWN  GVLAADGWTS  YSLEAFREGT  LEFYVKGAAG  GEDFVIGIMD  TNDVKSVLSL420
SGLAQTVTTD  WSLIRIPLSR  FTEQAPDLEL  SIIDKVVLEN  ASTQGEMSVW  LNRIKFTQNP480
AAELEIASVD  PVKAVTVAGL  PPELPQEVPV  TYENGTTGTA  SVSWEESDGY  RIRGRYTVRG540
TILQDTGPVP  VTAEVTVVRA  LSDEPHVIFL  DKKKAQWASA  EGHFSLGMEQ  ALDDQGMPVT600
NEQGNPVMTL  PVDPQVTFGG  LPAYRLQVTR  IPGPNWGYWG  TGLTMDNWNP  VNLEALYERG660
SLDFMIKGLT  GGESFSVVLT  DRAGALGTVK  LSDVAAVTTG  WRQVSIPLKR  LVPVSSAHRL720
KESTAVTLTS  DTGTGAAPLT  VWLSDMRFTS  EASREVVRFG  TKLTVPASQL  PQLPVLPATA780
EAVYNDGTAE  QVPVAWDAVT  FSSWGYPNPV  QGTAQGIDLP  ATLQFTVEGS  RSSGSSGSGS840
GSGSAGMPEE  PEAPIAVPVV  PAASSLYPNG  AAGTYTLPAL  KPAVDPADAL  LAVVNVQPGA900
LKEGYKAAAP  GPGQRPVMHI  KVPYMSGVTG  YAVKLPAGAV  SGAYPDAELS  VTTDLGRVVL960
PADLLNPDQL  NGAAAIRLVI  RRSDTADMKK  TAREQVGGRT  VLDIHLEADG  VILPWESREK1020
RVLVSPDYAP  TDEELEHPER  LVILYLGEDG  EAEPVPSGRY  DRTGGRMIFS  AGHFSRYAVA1080
WGSRTFGDLA  GYGWAQEAVE  LLASRGIVQG  TGPAEFAPGR  GVTRAEFVSL  LVRTLDLAGL1140
PAEADFRDVD  PSSPHYQAIA  AAARLGIAGG  IGGGLFAPDA  PVSRQDVIVL  TERALERAGR1200
LHAGAADSLP  SGVFRDAEDL  AGYAVPAVSA  LYGAGLIEGA  GGLLRPEAEM  SRAEAAVLLN1260
RIYPY1265

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help