CAZyme3D

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Entry ID

Information for CAZyme ID: AEY56803.1

Basic Information

GenBank IDAEY56803.1
FamilyCBM20
Sequence Length842
UniProt IDV9I6V4(100,100)Download
Average pLDDT?74.13
CAZy50 ID23569
CAZy50 RepYes, AEY56803.1
Structure ClusterSC_CBM20_clus87
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID7461
KingdomEukaryota
PhylumArthropoda
ClassInsecta
OrderHymenoptera
FamilyApidae
GenusApis
SpeciesApis cerana

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQRMWFIENK  EDGEYKQQEE  PRETNFIEVA  TEHTSDMRGS  KRDWIFRVQV  HKIEKNEVLY60
VVGNLPELGA  WNHNQAIQLS  QEHGSRDSPI  LFDSNSSGEF  YSDDGHDNAG  DNSFGDIDDE120
GGRIFSQKVA  LPIDADVEFR  YFVAVICHSN  GTKNSAKTLI  IRRWETHMTP  RFIKKNAPSN180
FSSDTLPDPD  KFGYYNGYCK  IERGWLTDET  VIQFKLFNNP  IKLWKNRLQN  RKVHIKMTPV240
NLIRHNSLEL  QQFGGDCVDD  SLSMDTQDII  DQPAFSITEV  AVMNDEEARF  KIQEQFGRAY300
NEDEFIIFNV  AVRYPETIAY  LVDYYVYSSR  CFPGEPPSHI  GFSYILPSTL  QSSVGLLTVP360
ITSTKHRPIG  QLTLEYVVIK  SIPDYPWDMN  ISYAKHWEQR  WSGLDVGHRG  LGTSFQTKNC420
ANVRENTIAS  LKTASYHGAD  MVEFDVQLSK  DHIPVIYHDF  YVSISLKRKK  QIEAMDMLEI480
PVKDLTLEQL  HLLKVYHVAE  GREKNPRFFD  EDLEDHQPFP  TLQTVLQELE  QHVGCNIEIK540
WTMQLKDGTF  ELNHPFDLNM  YLDIILKVVL  EYGGDRKIVF  SSFNPDICAM  IRLKQNKYPV600
VFLTQGVTSK  YPTYHDPRCQ  TIPMAVRHAL  AADILGINVH  TEDILRDPSQ  VKFVKDAGLI660
IFCWGDDNND  KDTIQHLKKL  GLHAVIYDKI  DEYNAKEVKE  SIFLVDAREN  QKALIALAQC720
NQSCAPQPQI  TNSLNSEKDF  YMDIDKSRNM  ITTTSTTTSF  ASFGKNSIGD  DNNIYPISTV780
KLPSTCDHQE  SKEISEMTKD  FSVCAKSFGH  SVKAKSISDL  VCGQTTTLSE  IYGEDDTAKD840
CL842

Predicted 3D structure by AlphaFold2 with pLDDT = 74.13 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MQRMWFIENK  EDGEYKQQEE  PRETNFIEVA  TEHTSDMRGS  KRDWIFRVQV  HKIEKNEVLY60
VVGNLPELGA  WNHNQAIQLS  QEHGSRDSPI  LFDSNSSGEF  YSDDGHDNAG  DNSFGDIDDE120
GGRIFSQKVA  LPIDADVEFR  YFVAVICHSN  GTKNSAKTLI  IRRWETHMTP  RFIKKNAPSN180
FSSDTLPDPD  KFGYYNGYCK  IERGWLTDET  VIQFKLFNNP  IKLWKNRLQN  RKVHIKMTPV240
NLIRHNSLEL  QQFGGDCVDD  SLSMDTQDII  DQPAFSITEV  AVMNDEEARF  KIQEQFGRAY300
NEDEFIIFNV  AVRYPETIAY  LVDYYVYSSR  CFPGEPPSHI  GFSYILPSTL  QSSVGLLTVP360
ITSTKHRPIG  QLTLEYVVIK  SIPDYPWDMN  ISYAKHWEQR  WSGLDVGHRG  LGTSFQTKNC420
ANVRENTIAS  LKTASYHGAD  MVEFDVQLSK  DHIPVIYHDF  YVSISLKRKK  QIEAMDMLEI480
PVKDLTLEQL  HLLKVYHVAE  GREKNPRFFD  EDLEDHQPFP  TLQTVLQELE  QHVGCNIEIK540
WTMQLKDGTF  ELNHPFDLNM  YLDIILKVVL  EYGGDRKIVF  SSFNPDICAM  IRLKQNKYPV600
VFLTQGVTSK  YPTYHDPRCQ  TIPMAVRHAL  AADILGINVH  TEDILRDPSQ  VKFVKDAGLI660
IFCWGDDNND  KDTIQHLKKL  GLHAVIYDKI  DEYNAKEVKE  SIFLVDAREN  QKALIALAQC720
NQSCAPQPQI  TNSLNSEKDF  YMDIDKSRNM  ITTTSTTTSF  ASFGKNSIGD  DNNIYPISTV780
KLPSTCDHQE  SKEISEMTKD  FSVCAKSFGH  SVKAKSISDL  VCGQTTTLSE  IYGEDDTAKD840
CL842

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM20(46-93)

MQRMWFIENK  EDGEYKQQEE  PRETNFIEVA  TEHTSDMRGS  KRDWIFRVQV  HKIEKNEVLY60
VVGNLPELGA  WNHNQAIQLS  QEHGSRDSPI  LFDSNSSGEF  YSDDGHDNAG  DNSFGDIDDE120
GGRIFSQKVA  LPIDADVEFR  YFVAVICHSN  GTKNSAKTLI  IRRWETHMTP  RFIKKNAPSN180
FSSDTLPDPD  KFGYYNGYCK  IERGWLTDET  VIQFKLFNNP  IKLWKNRLQN  RKVHIKMTPV240
NLIRHNSLEL  QQFGGDCVDD  SLSMDTQDII  DQPAFSITEV  AVMNDEEARF  KIQEQFGRAY300
NEDEFIIFNV  AVRYPETIAY  LVDYYVYSSR  CFPGEPPSHI  GFSYILPSTL  QSSVGLLTVP360
ITSTKHRPIG  QLTLEYVVIK  SIPDYPWDMN  ISYAKHWEQR  WSGLDVGHRG  LGTSFQTKNC420
ANVRENTIAS  LKTASYHGAD  MVEFDVQLSK  DHIPVIYHDF  YVSISLKRKK  QIEAMDMLEI480
PVKDLTLEQL  HLLKVYHVAE  GREKNPRFFD  EDLEDHQPFP  TLQTVLQELE  QHVGCNIEIK540
WTMQLKDGTF  ELNHPFDLNM  YLDIILKVVL  EYGGDRKIVF  SSFNPDICAM  IRLKQNKYPV600
VFLTQGVTSK  YPTYHDPRCQ  TIPMAVRHAL  AADILGINVH  TEDILRDPSQ  VKFVKDAGLI660
IFCWGDDNND  KDTIQHLKKL  GLHAVIYDKI  DEYNAKEVKE  SIFLVDAREN  QKALIALAQC720
NQSCAPQPQI  TNSLNSEKDF  YMDIDKSRNM  ITTTSTTTSF  ASFGKNSIGD  DNNIYPISTV780
KLPSTCDHQE  SKEISEMTKD  FSVCAKSFGH  SVKAKSISDL  VCGQTTTLSE  IYGEDDTAKD840
CL842

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help