CAZyme3D

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Entry ID

Information for CAZyme ID: AEM39669.1

Basic Information

GenBank IDAEM39669.1
FamilyGH130
Sequence Length389
UniProt IDG0ECU9(100,100)Download
Average pLDDT?91.95
CAZy50 ID105711
CAZy50 RepYes, AEM39669.1
Structure ClusterSC_GH130_clus37
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID694429
KingdomArchaea
PhylumThermoproteota
ClassThermoprotei
OrderDesulfurococcales
FamilyPyrodictiaceae
GenusPyrolobus
SpeciesPyrolobus fumarii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHVAGLASAL  GVKVCALGME  AKFLRDFPLA  EHAAELGKLR  HCETHDIFQR  LGVLTPQRVH60
LKNHPLANPL  TVFNAALDHG  SNGDMLVLYP  RIIIGYFKYA  SAIAEVELPL  EDLYTGSISI120
SHYPAEIIVY  PSTSVDIWGS  EDPRVTRIDG  TRHMVYVGRT  INYFEAHIRR  ERTLPVLAVE180
AGRHRWVKVG  YFVLPERLRP  HVISDKDAFL  VQASNGDLLL  FHRPHMDDEN  FYLTISIVPH240
DEYKRALEEA  ERGEPVPIRV  RGTRTILPVA  PFEEKLGWAS  PPVMVERDTF  LTLVHAVDVR300
LKRYRIFAML  VRYDRDVGPR  PIAVTPRYIM  EPRAMYEVYG  DRPFTVFPCG  AVRHGDRLII360
SYGAADSVVG  FAEAGIDDIM  AELDHLRLE389

Predicted 3D structure by AlphaFold2 with pLDDT = 91.95 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MHVAGLASAL  GVKVCALGME  AKFLRDFPLA  EHAAELGKLR  HCETHDIFQR  LGVLTPQRVH60
LKNHPLANPL  TVFNAALDHG  SNGDMLVLYP  RIIIGYFKYA  SAIAEVELPL  EDLYTGSISI120
SHYPAEIIVY  PSTSVDIWGS  EDPRVTRIDG  TRHMVYVGRT  INYFEAHIRR  ERTLPVLAVE180
AGRHRWVKVG  YFVLPERLRP  HVISDKDAFL  VQASNGDLLL  FHRPHMDDEN  FYLTISIVPH240
DEYKRALEEA  ERGEPVPIRV  RGTRTILPVA  PFEEKLGWAS  PPVMVERDTF  LTLVHAVDVR300
LKRYRIFAML  VRYDRDVGPR  PIAVTPRYIM  EPRAMYEVYG  DRPFTVFPCG  AVRHGDRLII360
SYGAADSVVG  FAEAGIDDIM  AELDHLRLE389

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH130(119-381)

MHVAGLASAL  GVKVCALGME  AKFLRDFPLA  EHAAELGKLR  HCETHDIFQR  LGVLTPQRVH60
LKNHPLANPL  TVFNAALDHG  SNGDMLVLYP  RIIIGYFKYA  SAIAEVELPL  EDLYTGSISI120
SHYPAEIIVY  PSTSVDIWGS  EDPRVTRIDG  TRHMVYVGRT  INYFEAHIRR  ERTLPVLAVE180
AGRHRWVKVG  YFVLPERLRP  HVISDKDAFL  VQASNGDLLL  FHRPHMDDEN  FYLTISIVPH240
DEYKRALEEA  ERGEPVPIRV  RGTRTILPVA  PFEEKLGWAS  PPVMVERDTF  LTLVHAVDVR300
LKRYRIFAML  VRYDRDVGPR  PIAVTPRYIM  EPRAMYEVYG  DRPFTVFPCG  AVRHGDRLII360
SYGAADSVVG  FAEAGIDDIM  AELDHLRLE389

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help