CAZyme3D

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Entry ID

Information for CAZyme ID: AEI40640.1

Basic Information

GenBank IDAEI40640.1
FamilyGH52
Sequence Length719
UniProt IDF8FRT3(100,100)Download
Average pLDDT?94.60
CAZy50 ID30769
CAZy50 RepNo, CQR57255.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1036673
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus mucilaginosus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSNANLFFNA  HHAPIGAFAS  FTLGFRGKRG  GLGLELGKPA  DENIYIGFES  RSGGFYEALP60
FFEEVEDASS  RYDVEKAGEK  GKASGLVSFG  ESSITREFKT  GTDTWRAGDL  TFRVYSPVRS120
VPDPGAADPV  RLKEAIVPAV  FAELTLDNTQ  GTTARRGFFG  YEGSDPYSAM  RRLDDTAQDG180
LTGVGQGRST  AIATKDEGVV  SALGFSLERI  LEAKLPHNYA  FGLGGTGALL  MEVPPGEKRT240
YRFAVCFYRG  GLVTSGIDAS  YYYTSYFHSI  EEVAGYALDR  FADLTASCAA  ADEWIGAEAL300
SPDQRFMLDH  AIHSYYGSTQ  LLDASGQAIW  VVNEGEYRMM  NTLDLTADQL  FYELIMNPWT360
VRNELELFVN  RYSYEDKVRF  PGDETEYPGG  LTFTHDMGVA  NVFSRPQYSA  YELAGISDCF420
SYMSHEELVN  WLCCALVYIE  QTQDREFAAK  QLPVIRQCFE  SMLNRDHPEA  EKRNGLMGLD480
SSRTQGGAEI  STYDSLDVSL  GQSRNNIYLA  GKCWAVYVGL  EKLFAHEGLG  ELSREAGLQA540
VRCASTIAAQ  LTDGGYIPAV  IGENNDSRII  PAIEGLVFPY  FTGCGEALEP  QGRFGTYIQA600
LTKHLETVLA  PGVCLFEDGA  WKLSSTSNNS  WLSKIYLCQF  IARTILGVSR  DEGGAKADAA660
HVRWLLHPQL  SYWCWSDQIL  SGEIIGSKYY  PRGVTAILWL  YEKKGSRLIQ  AAEAGGVAQ719

Predicted 3D structure by AlphaFold2 with pLDDT = 94.60 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH52(21-438)

MSNANLFFNA  HHAPIGAFAS  FTLGFRGKRG  GLGLELGKPA  DENIYIGFES  RSGGFYEALP60
FFEEVEDASS  RYDVEKAGEK  GKASGLVSFG  ESSITREFKT  GTDTWRAGDL  TFRVYSPVRS120
VPDPGAADPV  RLKEAIVPAV  FAELTLDNTQ  GTTARRGFFG  YEGSDPYSAM  RRLDDTAQDG180
LTGVGQGRST  AIATKDEGVV  SALGFSLERI  LEAKLPHNYA  FGLGGTGALL  MEVPPGEKRT240
YRFAVCFYRG  GLVTSGIDAS  YYYTSYFHSI  EEVAGYALDR  FADLTASCAA  ADEWIGAEAL300
SPDQRFMLDH  AIHSYYGSTQ  LLDASGQAIW  VVNEGEYRMM  NTLDLTADQL  FYELIMNPWT360
VRNELELFVN  RYSYEDKVRF  PGDETEYPGG  LTFTHDMGVA  NVFSRPQYSA  YELAGISDCF420
SYMSHEELVN  WLCCALVYIE  QTQDREFAAK  QLPVIRQCFE  SMLNRDHPEA  EKRNGLMGLD480
SSRTQGGAEI  STYDSLDVSL  GQSRNNIYLA  GKCWAVYVGL  EKLFAHEGLG  ELSREAGLQA540
VRCASTIAAQ  LTDGGYIPAV  IGENNDSRII  PAIEGLVFPY  FTGCGEALEP  QGRFGTYIQA600
LTKHLETVLA  PGVCLFEDGA  WKLSSTSNNS  WLSKIYLCQF  IARTILGVSR  DEGGAKADAA660
HVRWLLHPQL  SYWCWSDQIL  SGEIIGSKYY  PRGVTAILWL  YEKKGSRLIQ  AAEAGGVAQ719

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help