CAZyme3D

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Entry ID

Information for CAZyme ID: AEI40280.1

Basic Information

GenBank IDAEI40280.1
FamilyGH2
Sequence Length769
UniProt IDF8FQ60(100,100)Download
Average pLDDT?92.65
CAZy50 ID30636
CAZy50 RepYes, AEI40280.1
Structure ClusterSC_GH2_clus173
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1036673
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus mucilaginosus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIREIPYNEN  WMFTKNNEPA  YAHERMKEGQ  FVSLPHTWNA  EDGCSSDYYR  GSCWYQNLLT60
VSPEDLTKQI  YLEIGAAGNV  GKIYVNGCLA  EESRCGYAMF  RANLTPYLKA  GGNLISIMVD120
NTYDNEVLPL  LADFTFYGGL  YREVKLLMME  DLHFDVMDNG  RDGVYFTQKK  IGDRVFEWAV180
QGQVINELSP  TTGNVRLLLR  DHDGNVVSDS  TSELEFEGVT  PFELRGEIVD  PILWHGVERP240
YLYTATITIS  AAGRIRDSRQ  IEIGFRTIEI  TTEQGLLLNG  SPLKLNGVCR  HQDFAGVGNA300
VTKSHMEQDI  ALIREVGANS  IRLAHYQHDD  YFYSLCDRHG  LLVWAEIPFI  SVPSSKDPEN360
QNAVEQLEKL  VKQAFNHTSI  YCWGVQNEIT  IAVETEYTHK  TINKFVDLVN  EWDPGRYTAQ420
ANINGVEDNS  IINSYTDVVG  YNLYYGWYYG  DVQDLQKRFD  SFHAANPDIP  LILSEYGVDT480
NPKFHSYVPK  VKDYTEEYQL  MFHHNAIKAI  HERPFVIGGY  VWNMFDFGSA  NRKEGGETGR540
NLKGLVTFDR  LTKKDAFYLY  KAYWSKEPFV  HLAGRRFVNR  HQAQNDIMVL  TNLQDVRVYV600
NNAFIARIQS  DEAVKIVKNV  LLSEGDNLVR  VEGVDGRGSV  CMDEMVLHRV  YEPDESYIHV660
VEDQSKNVVN  WFEKFDLSET  EAVPLKDGYY  STFDTIEDLY  SNEAAKAVFL  KYFGHVTGNP720
FFEVTMNVMS  IEKMAQLEFY  KIVPELLIAM  NKELNVIQKV  EAETSDVQQ769

Predicted 3D structure by AlphaFold2 with pLDDT = 92.65 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MIREIPYNEN  WMFTKNNEPA  YAHERMKEGQ  FVSLPHTWNA  EDGCSSDYYR  GSCWYQNLLT60
VSPEDLTKQI  YLEIGAAGNV  GKIYVNGCLA  EESRCGYAMF  RANLTPYLKA  GGNLISIMVD120
NTYDNEVLPL  LADFTFYGGL  YREVKLLMME  DLHFDVMDNG  RDGVYFTQKK  IGDRVFEWAV180
QGQVINELSP  TTGNVRLLLR  DHDGNVVSDS  TSELEFEGVT  PFELRGEIVD  PILWHGVERP240
YLYTATITIS  AAGRIRDSRQ  IEIGFRTIEI  TTEQGLLLNG  SPLKLNGVCR  HQDFAGVGNA300
VTKSHMEQDI  ALIREVGANS  IRLAHYQHDD  YFYSLCDRHG  LLVWAEIPFI  SVPSSKDPEN360
QNAVEQLEKL  VKQAFNHTSI  YCWGVQNEIT  IAVETEYTHK  TINKFVDLVN  EWDPGRYTAQ420
ANINGVEDNS  IINSYTDVVG  YNLYYGWYYG  DVQDLQKRFD  SFHAANPDIP  LILSEYGVDT480
NPKFHSYVPK  VKDYTEEYQL  MFHHNAIKAI  HERPFVIGGY  VWNMFDFGSA  NRKEGGETGR540
NLKGLVTFDR  LTKKDAFYLY  KAYWSKEPFV  HLAGRRFVNR  HQAQNDIMVL  TNLQDVRVYV600
NNAFIARIQS  DEAVKIVKNV  LLSEGDNLVR  VEGVDGRGSV  CMDEMVLHRV  YEPDESYIHV660
VEDQSKNVVN  WFEKFDLSET  EAVPLKDGYY  STFDTIEDLY  SNEAAKAVFL  KYFGHVTGNP720
FFEVTMNVMS  IEKMAQLEFY  KIVPELLIAM  NKELNVIQKV  EAETSDVQQ769

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(5-609)

MIREIPYNEN  WMFTKNNEPA  YAHERMKEGQ  FVSLPHTWNA  EDGCSSDYYR  GSCWYQNLLT60
VSPEDLTKQI  YLEIGAAGNV  GKIYVNGCLA  EESRCGYAMF  RANLTPYLKA  GGNLISIMVD120
NTYDNEVLPL  LADFTFYGGL  YREVKLLMME  DLHFDVMDNG  RDGVYFTQKK  IGDRVFEWAV180
QGQVINELSP  TTGNVRLLLR  DHDGNVVSDS  TSELEFEGVT  PFELRGEIVD  PILWHGVERP240
YLYTATITIS  AAGRIRDSRQ  IEIGFRTIEI  TTEQGLLLNG  SPLKLNGVCR  HQDFAGVGNA300
VTKSHMEQDI  ALIREVGANS  IRLAHYQHDD  YFYSLCDRHG  LLVWAEIPFI  SVPSSKDPEN360
QNAVEQLEKL  VKQAFNHTSI  YCWGVQNEIT  IAVETEYTHK  TINKFVDLVN  EWDPGRYTAQ420
ANINGVEDNS  IINSYTDVVG  YNLYYGWYYG  DVQDLQKRFD  SFHAANPDIP  LILSEYGVDT480
NPKFHSYVPK  VKDYTEEYQL  MFHHNAIKAI  HERPFVIGGY  VWNMFDFGSA  NRKEGGETGR540
NLKGLVTFDR  LTKKDAFYLY  KAYWSKEPFV  HLAGRRFVNR  HQAQNDIMVL  TNLQDVRVYV600
NNAFIARIQS  DEAVKIVKNV  LLSEGDNLVR  VEGVDGRGSV  CMDEMVLHRV  YEPDESYIHV660
VEDQSKNVVN  WFEKFDLSET  EAVPLKDGYY  STFDTIEDLY  SNEAAKAVFL  KYFGHVTGNP720
FFEVTMNVMS  IEKMAQLEFY  KIVPELLIAM  NKELNVIQKV  EAETSDVQQ769

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help