Information for CAZyme ID: AEG18833.1
Basic Information
| GenBank ID | AEG18833.1 |
| Family | GT1, GT2 |
| Sequence Length | 613 |
| UniProt ID | F6D4H0(100,100) |
| Average pLDDT? | 82.95 |
| CAZy50 ID | 50597 |
| CAZy50 Rep | Yes, AEG18833.1 |
| Structure Cluster | SC_GT1_clus53, SC_GT2_clus1024 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 868131 |
| Kingdom | Archaea |
| Phylum | Euryarchaeota |
| Class | Methanobacteria |
| Order | Methanobacteriales |
| Family | Methanobacteriaceae |
| Genus | Methanobacterium |
| Species | Methanobacterium paludis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MKISIIIPTY NEEDYLPKLL ESIKNQEFRD YEVIVADANS KDKTREIAES YGCKVVEGGI | 60 |
| PAIGRNRGAS VAQGEYLLFL DSDVILTAGY LESALDEFID NELGIAITQI TPLSDSLIDK | 120 |
| VSHDFANLFM KSVESIKPHG AGCYGILTMK KLHDEVGGFD EAIDFGEDTD YIEKIAKISS | 180 |
| FRVLREPQLL VSIRRLEKEG RKNIAFKYAK STLYQFSGRK ITAEELDYDF DYSSEDNNED | 240 |
| HPDDNVDETP LKVGTSNEKG KSRRKRILYS ICGEGMGHAI RSGVVIKHLA KKNDVVIFTS | 300 |
| DRAYKYISKK YDNVYEIGGF NTVYEDNEVK NRKTFVKGMK GFPKDLKNSL KIMNNVVKEF | 360 |
| KPDVIVSDFE FYANIMSKLV KIPLISLDNI SVLTQCVLDV PRKYRNDRIR AEGVAYSFTT | 420 |
| KPKRYLITSF FKAPIKNPEK AKMFSPILRE EILNLKPELG DHILVYQTST SNKKLMDLLQ | 480 |
| NTNESCIVYG FNEDTVDGNL QFRKFNEDQF YRDLASCKAV IANGGFTMIT EALYLQKPVL | 540 |
| SIPVKKQFEQ ILNAIYIERL GYGKFCEQLE KEDLEDFLQN LEGYHDKIKS SYKPKGNEEI | 600 |
| LRELDETIED YSK | 613 |
Predicted 3D structure by AlphaFold2 with pLDDT = 82.95 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MKISIIIPTY NEEDYLPKLL ESIKNQEFRD YEVIVADANS KDKTREIAES YGCKVVEGGI | 60 |
| PAIGRNRGAS VAQGEYLLFL DSDVILTAGY LESALDEFID NELGIAITQI TPLSDSLIDK | 120 |
| VSHDFANLFM KSVESIKPHG AGCYGILTMK KLHDEVGGFD EAIDFGEDTD YIEKIAKISS | 180 |
| FRVLREPQLL VSIRRLEKEG RKNIAFKYAK STLYQFSGRK ITAEELDYDF DYSSEDNNED | 240 |
| HPDDNVDETP LKVGTSNEKG KSRRKRILYS ICGEGMGHAI RSGVVIKHLA KKNDVVIFTS | 300 |
| DRAYKYISKK YDNVYEIGGF NTVYEDNEVK NRKTFVKGMK GFPKDLKNSL KIMNNVVKEF | 360 |
| KPDVIVSDFE FYANIMSKLV KIPLISLDNI SVLTQCVLDV PRKYRNDRIR AEGVAYSFTT | 420 |
| KPKRYLITSF FKAPIKNPEK AKMFSPILRE EILNLKPELG DHILVYQTST SNKKLMDLLQ | 480 |
| NTNESCIVYG FNEDTVDGNL QFRKFNEDQF YRDLASCKAV IANGGFTMIT EALYLQKPVL | 540 |
| SIPVKKQFEQ ILNAIYIERL GYGKFCEQLE KEDLEDFLQN LEGYHDKIKS SYKPKGNEEI | 600 |
| LRELDETIED YSK | 613 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.