CAZyme3D

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Entry ID

Information for CAZyme ID: AEF19816.1

Basic Information

GenBank IDAEF19816.1
FamilyGT4
Sequence Length362
UniProt IDM1RUG5(100,100)Download
Average pLDDT?93.11
CAZy50 ID124963
CAZy50 RepYes, AEF19816.1
Structure ClusterSC_GT4_clus185
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID547143
KingdomBacteria
PhylumAquificota
ClassAquificae
OrderAquificales
FamilyAquificaceae
GenusHydrogenobaculum
SpeciesHydrogenobaculum sp. 3684

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKILSVLDAV  GWGGTKEQAY  ITAVGLKNLG  FDVSFALSFD  FEAFKEKIKD  KVPYYEFEKE60
TPFKRISFFT  YKRLYDIISK  NNFDVIFANS  PKALDYVRVV  YPFLSKKPKI  VAFKRSGRKS120
NMLSKYFKYS  IADKIVVVSK  KVYEELLEED  FFKDKLRLIQ  SGIDLSRFKR  ASYEEKIALR180
KKYNLPLDKH  IFVNVANYNP  EIKGHIDILK  AYKQIEKDNT  MLLFVGLLTD  KDAMKEASSF240
GIKHFLGLGY  KEDVEYILRA  CDSFVLGSRL  EGIAGALLQA  MASGLVCIST  NVGGISEYMK300
DGINGFLIPP  KDINAMANTM  EKVLNLDSNV  REHIIQNAIA  TSKEYSIENM  LSKYVKLLEE360
LS362

Predicted 3D structure by AlphaFold2 with pLDDT = 93.11 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKILSVLDAV  GWGGTKEQAY  ITAVGLKNLG  FDVSFALSFD  FEAFKEKIKD  KVPYYEFEKE60
TPFKRISFFT  YKRLYDIISK  NNFDVIFANS  PKALDYVRVV  YPFLSKKPKI  VAFKRSGRKS120
NMLSKYFKYS  IADKIVVVSK  KVYEELLEED  FFKDKLRLIQ  SGIDLSRFKR  ASYEEKIALR180
KKYNLPLDKH  IFVNVANYNP  EIKGHIDILK  AYKQIEKDNT  MLLFVGLLTD  KDAMKEASSF240
GIKHFLGLGY  KEDVEYILRA  CDSFVLGSRL  EGIAGALLQA  MASGLVCIST  NVGGISEYMK300
DGINGFLIPP  KDINAMANTM  EKVLNLDSNV  REHIIQNAIA  TSKEYSIENM  LSKYVKLLEE360
LS362

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(184-331)

MKILSVLDAV  GWGGTKEQAY  ITAVGLKNLG  FDVSFALSFD  FEAFKEKIKD  KVPYYEFEKE60
TPFKRISFFT  YKRLYDIISK  NNFDVIFANS  PKALDYVRVV  YPFLSKKPKI  VAFKRSGRKS120
NMLSKYFKYS  IADKIVVVSK  KVYEELLEED  FFKDKLRLIQ  SGIDLSRFKR  ASYEEKIALR180
KKYNLPLDKH  IFVNVANYNP  EIKGHIDILK  AYKQIEKDNT  MLLFVGLLTD  KDAMKEASSF240
GIKHFLGLGY  KEDVEYILRA  CDSFVLGSRL  EGIAGALLQA  MASGLVCIST  NVGGISEYMK300
DGINGFLIPP  KDINAMANTM  EKVLNLDSNV  REHIIQNAIA  TSKEYSIENM  LSKYVKLLEE360
LS362

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help