CAZyme3D

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Entry ID

Information for CAZyme ID: AEE49615.1

Basic Information

GenBank IDAEE49615.1
FamilyGT51
Sequence Length842
UniProt IDF4L1V6(100,100)Download
Average pLDDT?85.86
CAZy50 ID23551
CAZy50 RepYes, AEE49615.1
Structure ClusterSC_GT51_clus87
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID760192
KingdomBacteria
PhylumBacteroidota
ClassSaprospiria
OrderSaprospirales
FamilyHaliscomenobacteraceae
GenusHaliscomenobacter
SpeciesHaliscomenobacter hydrossis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MYTNNSRGNE  KKSKKSLICR  AMNRVNPFLP  RFILSFSAVA  IERFQLIKSL  IINYQQVKPL60
AISVATGLAF  LTWYGLSLPR  PLFKVSISQV  VEDARGELLS  ARIAADGQWR  FPSPDSIPLV120
YHDALIEFED  RHFYHHQGVD  PLALLRATFQ  NLNRGSIVSG  GSTISMQVIR  MARGNRSRSI180
IQKVIEAILA  TRLEFGYSKK  QILNLYAANA  PFGGNVVGLE  AASWRYFGKS  PAFLSWAEGA240
LLAVLPNSPA  LIHPGRNRNV  LLLKRNKLLD  RLALRGVIDR  TTCDLAKSES  LPEAPLPLPR300
LAPHLLDRAN  KEKGQLRLRS  SLQLGLQESV  MAVAQRHQQV  LQFSQIHNLA  ILVADVRSGE360
VLAYVGNAPQ  AGAEHGEQVD  IITAPRSSGS  ILKPFLFGLA  LNDAIVLPNS  LLPDVPMNIN420
GYRPENYQDG  YDGLVPASEA  LSRSLNIPFV  DLLRQYDFSR  FHYQLKKMGM  STLSQPPGHY480
GLSLILGGAE  TKLWDLCGMY  ASMARVLGHY  AGYSGRYDPD  DYHGLSYTPV  PAQRPKKLME540
LSAEAEFFSA  GAIWATFEAM  QEVQRPGTEG  EWRQFSTSRR  VAWKTGTSFG  FRDAWAIGIT600
PEYLVGVWVG  NADGEGRPGL  VGTLAAAPLL  FDVFGTLPST  TWFNCPYDDL  AKAEVCAQTG660
FRAGQNCPSD  TILVPKKALN  SPVCTFHQLV  HLDRSEKYQV  NAQCFLPAQI  VHRPWLVFPP720
LEEFYYRQRH  PEYAILPPLH  PDCGAQASSE  SSPMQLIYPR  QVSRIFVPVD  LDGSKSKTIF780
QVAHRRAKAK  IHWHIDQEYI  GTTQTFHQFA  LEPPAGKHLL  TLVDETGNRL  EQKFEIILKK840
KR842

Predicted 3D structure by AlphaFold2 with pLDDT = 85.86 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MYTNNSRGNE  KKSKKSLICR  AMNRVNPFLP  RFILSFSAVA  IERFQLIKSL  IINYQQVKPL60
AISVATGLAF  LTWYGLSLPR  PLFKVSISQV  VEDARGELLS  ARIAADGQWR  FPSPDSIPLV120
YHDALIEFED  RHFYHHQGVD  PLALLRATFQ  NLNRGSIVSG  GSTISMQVIR  MARGNRSRSI180
IQKVIEAILA  TRLEFGYSKK  QILNLYAANA  PFGGNVVGLE  AASWRYFGKS  PAFLSWAEGA240
LLAVLPNSPA  LIHPGRNRNV  LLLKRNKLLD  RLALRGVIDR  TTCDLAKSES  LPEAPLPLPR300
LAPHLLDRAN  KEKGQLRLRS  SLQLGLQESV  MAVAQRHQQV  LQFSQIHNLA  ILVADVRSGE360
VLAYVGNAPQ  AGAEHGEQVD  IITAPRSSGS  ILKPFLFGLA  LNDAIVLPNS  LLPDVPMNIN420
GYRPENYQDG  YDGLVPASEA  LSRSLNIPFV  DLLRQYDFSR  FHYQLKKMGM  STLSQPPGHY480
GLSLILGGAE  TKLWDLCGMY  ASMARVLGHY  AGYSGRYDPD  DYHGLSYTPV  PAQRPKKLME540
LSAEAEFFSA  GAIWATFEAM  QEVQRPGTEG  EWRQFSTSRR  VAWKTGTSFG  FRDAWAIGIT600
PEYLVGVWVG  NADGEGRPGL  VGTLAAAPLL  FDVFGTLPST  TWFNCPYDDL  AKAEVCAQTG660
FRAGQNCPSD  TILVPKKALN  SPVCTFHQLV  HLDRSEKYQV  NAQCFLPAQI  VHRPWLVFPP720
LEEFYYRQRH  PEYAILPPLH  PDCGAQASSE  SSPMQLIYPR  QVSRIFVPVD  LDGSKSKTIF780
QVAHRRAKAK  IHWHIDQEYI  GTTQTFHQFA  LEPPAGKHLL  TLVDETGNRL  EQKFEIILKK840
KR842

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(114-272)

MYTNNSRGNE  KKSKKSLICR  AMNRVNPFLP  RFILSFSAVA  IERFQLIKSL  IINYQQVKPL60
AISVATGLAF  LTWYGLSLPR  PLFKVSISQV  VEDARGELLS  ARIAADGQWR  FPSPDSIPLV120
YHDALIEFED  RHFYHHQGVD  PLALLRATFQ  NLNRGSIVSG  GSTISMQVIR  MARGNRSRSI180
IQKVIEAILA  TRLEFGYSKK  QILNLYAANA  PFGGNVVGLE  AASWRYFGKS  PAFLSWAEGA240
LLAVLPNSPA  LIHPGRNRNV  LLLKRNKLLD  RLALRGVIDR  TTCDLAKSES  LPEAPLPLPR300
LAPHLLDRAN  KEKGQLRLRS  SLQLGLQESV  MAVAQRHQQV  LQFSQIHNLA  ILVADVRSGE360
VLAYVGNAPQ  AGAEHGEQVD  IITAPRSSGS  ILKPFLFGLA  LNDAIVLPNS  LLPDVPMNIN420
GYRPENYQDG  YDGLVPASEA  LSRSLNIPFV  DLLRQYDFSR  FHYQLKKMGM  STLSQPPGHY480
GLSLILGGAE  TKLWDLCGMY  ASMARVLGHY  AGYSGRYDPD  DYHGLSYTPV  PAQRPKKLME540
LSAEAEFFSA  GAIWATFEAM  QEVQRPGTEG  EWRQFSTSRR  VAWKTGTSFG  FRDAWAIGIT600
PEYLVGVWVG  NADGEGRPGL  VGTLAAAPLL  FDVFGTLPST  TWFNCPYDDL  AKAEVCAQTG660
FRAGQNCPSD  TILVPKKALN  SPVCTFHQLV  HLDRSEKYQV  NAQCFLPAQI  VHRPWLVFPP720
LEEFYYRQRH  PEYAILPPLH  PDCGAQASSE  SSPMQLIYPR  QVSRIFVPVD  LDGSKSKTIF780
QVAHRRAKAK  IHWHIDQEYI  GTTQTFHQFA  LEPPAGKHLL  TLVDETGNRL  EQKFEIILKK840
KR842

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help