CAZyme3D

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Entry ID

Information for CAZyme ID: AEA11889.1

Basic Information

GenBank IDAEA11889.1
FamilyGH5_19
Sequence Length627
UniProt IDF2L2V1(100,100)Download
Average pLDDT?95.34
CAZy50 ID48584
CAZy50 RepYes, AEA11889.1
Structure ClusterSC_GH5_clus134
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID999630
KingdomArchaea
PhylumThermoproteota
ClassThermoprotei
OrderThermoproteales
FamilyThermoproteaceae
GenusThermoproteus
SpeciesThermoproteus uzoniensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFILGVNYWP  RKHNIKMWKE  WNPEDIREDL  DTMKDLGIRA  LRFFILAEDF  FDSYGGVSSE60
ALAKLRHFMD  MLAERGLLGY  PTLIVGHMSG  RNWAIPWAPD  WDIYAPQAVE  RGVRAVLEVV120
KALRDHKALG  GWILSNELSL  VKAARSRYEA  LSLLRAYSSA  IKSADPAHPF  SSGDVSSSYL180
QEAPNVKGLV  DWVGPHIYRY  DTNLVRHGYL  YPAFVELFSN  DGDMPVLLEE  FGFSTYQFSE240
EQHANFINDV  LWSALAHGAF  GAFIWCFSDF  SQEGDPPYEW  RLLELGFGLV  RADGTLKPAA300
TAVKKFSQDL  KRLEEIGLGD  RFKRPEAQAS  VVVPFYMYRD  YEFVYQGWRN  EPGLKPALMG360
LTLGFMSGLR  ISSVYELSRE  RLRQKRLLVF  PSAPTALATT  WRLAYEIANS  GGLVYASFFR420
SFGNVAPITH  DAATHLWREL  FGVENALLPG  SVGVRYGGIF  RVKFVADFGP  IRSGEELEFA480
LDAPVYTYAV  KPVDAEVVAV  DHKNRPVVLA  RKGAVLSVIP  FELMLAYMEH  VDWLRGYHRI540
YAALAQMAGL  DIPYYSTDPR  VELSRFEGKD  GDLVIAINHS  YEAVTAAVVA  RGVKSVEAVA600
GSGSVEGTEP  ISLKLGPKQA  VAFLVKR627

Predicted 3D structure by AlphaFold2 with pLDDT = 95.34 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MFILGVNYWP  RKHNIKMWKE  WNPEDIREDL  DTMKDLGIRA  LRFFILAEDF  FDSYGGVSSE60
ALAKLRHFMD  MLAERGLLGY  PTLIVGHMSG  RNWAIPWAPD  WDIYAPQAVE  RGVRAVLEVV120
KALRDHKALG  GWILSNELSL  VKAARSRYEA  LSLLRAYSSA  IKSADPAHPF  SSGDVSSSYL180
QEAPNVKGLV  DWVGPHIYRY  DTNLVRHGYL  YPAFVELFSN  DGDMPVLLEE  FGFSTYQFSE240
EQHANFINDV  LWSALAHGAF  GAFIWCFSDF  SQEGDPPYEW  RLLELGFGLV  RADGTLKPAA300
TAVKKFSQDL  KRLEEIGLGD  RFKRPEAQAS  VVVPFYMYRD  YEFVYQGWRN  EPGLKPALMG360
LTLGFMSGLR  ISSVYELSRE  RLRQKRLLVF  PSAPTALATT  WRLAYEIANS  GGLVYASFFR420
SFGNVAPITH  DAATHLWREL  FGVENALLPG  SVGVRYGGIF  RVKFVADFGP  IRSGEELEFA480
LDAPVYTYAV  KPVDAEVVAV  DHKNRPVVLA  RKGAVLSVIP  FELMLAYMEH  VDWLRGYHRI540
YAALAQMAGL  DIPYYSTDPR  VELSRFEGKD  GDLVIAINHS  YEAVTAAVVA  RGVKSVEAVA600
GSGSVEGTEP  ISLKLGPKQA  VAFLVKR627

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_19(4-270)

MFILGVNYWP  RKHNIKMWKE  WNPEDIREDL  DTMKDLGIRA  LRFFILAEDF  FDSYGGVSSE60
ALAKLRHFMD  MLAERGLLGY  PTLIVGHMSG  RNWAIPWAPD  WDIYAPQAVE  RGVRAVLEVV120
KALRDHKALG  GWILSNELSL  VKAARSRYEA  LSLLRAYSSA  IKSADPAHPF  SSGDVSSSYL180
QEAPNVKGLV  DWVGPHIYRY  DTNLVRHGYL  YPAFVELFSN  DGDMPVLLEE  FGFSTYQFSE240
EQHANFINDV  LWSALAHGAF  GAFIWCFSDF  SQEGDPPYEW  RLLELGFGLV  RADGTLKPAA300
TAVKKFSQDL  KRLEEIGLGD  RFKRPEAQAS  VVVPFYMYRD  YEFVYQGWRN  EPGLKPALMG360
LTLGFMSGLR  ISSVYELSRE  RLRQKRLLVF  PSAPTALATT  WRLAYEIANS  GGLVYASFFR420
SFGNVAPITH  DAATHLWREL  FGVENALLPG  SVGVRYGGIF  RVKFVADFGP  IRSGEELEFA480
LDAPVYTYAV  KPVDAEVVAV  DHKNRPVVLA  RKGAVLSVIP  FELMLAYMEH  VDWLRGYHRI540
YAALAQMAGL  DIPYYSTDPR  VELSRFEGKD  GDLVIAINHS  YEAVTAAVVA  RGVKSVEAVA600
GSGSVEGTEP  ISLKLGPKQA  VAFLVKR627

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help