CAZyme3D

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Entry ID

Information for CAZyme ID: ADY55909.1

Basic Information

GenBank IDADY55909.1
FamilyCBM22, GH5_25
Sequence Length514
UniProt IDF0SY74(100,100)Download
Average pLDDT?85.49
CAZy50 ID65986
CAZy50 RepYes, ADY55909.1
Structure ClusterSC_CBM22_clus24, SC_GH5_clus298
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID645991
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyDesulfitobacteriaceae
GenusSyntrophobotulus
SpeciesSyntrophobotulus glycolicus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKRFFQKLTV  FILIAALSLS  VYPQNVFSLT  AFSYSFESGQ  TDGWSGSAIL  QENVGSCTLQ60
TDTAKAYEGK  QSLRIEYSGS  TKYVITGPEP  ETINPGDRIE  YWIFIPKSSN  LNRIYFYSID120
SEGNRDESWF  HNDEGLVRGK  WFNLSYRVDP  EGNAPFSSYG  FDLETEHGQS  GSLWIDAIRI180
KSDEVKTCPT  VPGLRKGVSY  TTSLSTLKEG  NNTLNQSNLD  LIRNSGFDHI  RLPIKLNDQS240
LETAPYTINE  DYLELVDLAI  AQALAKDLNV  ILDLHNYPIL  TEGTNKKLDE  ERYFAFWTQL300
SNRYSQYSDN  LYFQILDEPD  WYIGSEKLNS  ILQKSLSIIR  ETNPTRNLIV  PHTRWSGVRS360
VNMLELPEND  RHLIVSIHFY  EPIAFTHQGT  DWIFDSLKSQ  KGVPWSGTVK  EKYAISDLFD420
LVADWAVTNN  RPVILDEFGV  YNLAPSDDRA  IWTDFVRETA  EERNISWTYW  EFNAGFGVFA480
PWKGMFRLEV  LDALIPDSID  KTGTGFTIAS  EITN514

Predicted 3D structure by AlphaFold2 with pLDDT = 85.49 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKRFFQKLTV  FILIAALSLS  VYPQNVFSLT  AFSYSFESGQ  TDGWSGSAIL  QENVGSCTLQ60
TDTAKAYEGK  QSLRIEYSGS  TKYVITGPEP  ETINPGDRIE  YWIFIPKSSN  LNRIYFYSID120
SEGNRDESWF  HNDEGLVRGK  WFNLSYRVDP  EGNAPFSSYG  FDLETEHGQS  GSLWIDAIRI180
KSDEVKTCPT  VPGLRKGVSY  TTSLSTLKEG  NNTLNQSNLD  LIRNSGFDHI  RLPIKLNDQS240
LETAPYTINE  DYLELVDLAI  AQALAKDLNV  ILDLHNYPIL  TEGTNKKLDE  ERYFAFWTQL300
SNRYSQYSDN  LYFQILDEPD  WYIGSEKLNS  ILQKSLSIIR  ETNPTRNLIV  PHTRWSGVRS360
VNMLELPEND  RHLIVSIHFY  EPIAFTHQGT  DWIFDSLKSQ  KGVPWSGTVK  EKYAISDLFD420
LVADWAVTNN  RPVILDEFGV  YNLAPSDDRA  IWTDFVRETA  EERNISWTYW  EFNAGFGVFA480
PWKGMFRLEV  LDALIPDSID  KTGTGFTIAS  EITN514

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM44(34-178)+GH5_25(212-473)

MKRFFQKLTV  FILIAALSLS  VYPQNVFSLT  AFSYSFESGQ  TDGWSGSAIL  QENVGSCTLQ60
TDTAKAYEGK  QSLRIEYSGS  TKYVITGPEP  ETINPGDRIE  YWIFIPKSSN  LNRIYFYSID120
SEGNRDESWF  HNDEGLVRGK  WFNLSYRVDP  EGNAPFSSYG  FDLETEHGQS  GSLWIDAIRI180
KSDEVKTCPT  VPGLRKGVSY  TTSLSTLKEG  NNTLNQSNLD  LIRNSGFDHI  RLPIKLNDQS240
LETAPYTINE  DYLELVDLAI  AQALAKDLNV  ILDLHNYPIL  TEGTNKKLDE  ERYFAFWTQL300
SNRYSQYSDN  LYFQILDEPD  WYIGSEKLNS  ILQKSLSIIR  ETNPTRNLIV  PHTRWSGVRS360
VNMLELPEND  RHLIVSIHFY  EPIAFTHQGT  DWIFDSLKSQ  KGVPWSGTVK  EKYAISDLFD420
LVADWAVTNN  RPVILDEFGV  YNLAPSDDRA  IWTDFVRETA  EERNISWTYW  EFNAGFGVFA480
PWKGMFRLEV  LDALIPDSID  KTGTGFTIAS  EITN514

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help