CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: ADY43188.1

Basic Information

GenBank IDADY43188.1
FamilyGT92
Sequence Length454
UniProt IDF1KZ84(100,100)Download
Average pLDDT?86.03
CAZy50 ID79046
CAZy50 RepYes, ADY43188.1
Structure ClusterSC_GT92_clus32
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID6253
KingdomEukaryota
PhylumNematoda
ClassChromadorea
OrderRhabditida
FamilyAscarididae
GenusAscaris
SpeciesAscaris suum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQRRSHMIIV  AIFTFISVAF  LFLPQAVTNV  QPRPHLSNQL  ESNSLIIYRA  YVDQRMHWPA60
IRIIAFSQCR  DINSTLRTST  SNAILRAEPV  EGSCPWKWAP  TCKWVAFMLT  ANLTQRHPIP120
KSIFLLEENR  QAMIRVHRMP  SARSGLHVCV  PPLYWYSDYV  AIIQFIEIWK  LQGASHFYIY180
YQSISRVVLN  VIRAYAKQGI  VTIIEWRLVP  RSTIDPNRSI  YRIGHSLAHN  DCLLRSNGRF240
VALVDIDEFI  IPNGTDLIPF  LTKLLQREPL  VGSFIFAHSR  LRFSQQNRSL  QINDWRNINF300
EWLLDMEFEP  GNGPPKTIFL  PDRTEIMLTH  SALRHLNPFV  QVTVNDSEAR  LYHARNTWSS360
SDIPGDFISL  RIFDTEKVTL  IRRNYFTIMS  TLILLDDENL  SNATNISRLV  TRCLSKWKEQ420
GCKTPFHSCR  KLLLNEANWI  FSDDTLSKSP  YIIL454

Predicted 3D structure by AlphaFold2 with pLDDT = 86.03 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MQRRSHMIIV  AIFTFISVAF  LFLPQAVTNV  QPRPHLSNQL  ESNSLIIYRA  YVDQRMHWPA60
IRIIAFSQCR  DINSTLRTST  SNAILRAEPV  EGSCPWKWAP  TCKWVAFMLT  ANLTQRHPIP120
KSIFLLEENR  QAMIRVHRMP  SARSGLHVCV  PPLYWYSDYV  AIIQFIEIWK  LQGASHFYIY180
YQSISRVVLN  VIRAYAKQGI  VTIIEWRLVP  RSTIDPNRSI  YRIGHSLAHN  DCLLRSNGRF240
VALVDIDEFI  IPNGTDLIPF  LTKLLQREPL  VGSFIFAHSR  LRFSQQNRSL  QINDWRNINF300
EWLLDMEFEP  GNGPPKTIFL  PDRTEIMLTH  SALRHLNPFV  QVTVNDSEAR  LYHARNTWSS360
SDIPGDFISL  RIFDTEKVTL  IRRNYFTIMS  TLILLDDENL  SNATNISRLV  TRCLSKWKEQ420
GCKTPFHSCR  KLLLNEANWI  FSDDTLSKSP  YIIL454

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT92(147-361)

MQRRSHMIIV  AIFTFISVAF  LFLPQAVTNV  QPRPHLSNQL  ESNSLIIYRA  YVDQRMHWPA60
IRIIAFSQCR  DINSTLRTST  SNAILRAEPV  EGSCPWKWAP  TCKWVAFMLT  ANLTQRHPIP120
KSIFLLEENR  QAMIRVHRMP  SARSGLHVCV  PPLYWYSDYV  AIIQFIEIWK  LQGASHFYIY180
YQSISRVVLN  VIRAYAKQGI  VTIIEWRLVP  RSTIDPNRSI  YRIGHSLAHN  DCLLRSNGRF240
VALVDIDEFI  IPNGTDLIPF  LTKLLQREPL  VGSFIFAHSR  LRFSQQNRSL  QINDWRNINF300
EWLLDMEFEP  GNGPPKTIFL  PDRTEIMLTH  SALRHLNPFV  QVTVNDSEAR  LYHARNTWSS360
SDIPGDFISL  RIFDTEKVTL  IRRNYFTIMS  TLILLDDENL  SNATNISRLV  TRCLSKWKEQ420
GCKTPFHSCR  KLLLNEANWI  FSDDTLSKSP  YIIL454

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help