CAZyme3D

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Entry ID

Information for CAZyme ID: ADV42056.1

Basic Information

GenBank IDADV42056.1
FamilyGH2
Sequence Length1048
UniProt IDE6SR52(100,100)Download
Average pLDDT?94.37
CAZy50 ID12291
CAZy50 RepYes, ADV42056.1
Structure ClusterSC_GH2_clus84
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID693979
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides helcogenes

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRKGVVCRHK  EFIKFSSMNK  HFITGLFTVM  ALTANAQSFN  EWRDSEVNAV  NRAPMHTNYF60
AYESVDAASR  GVKEQSSNFM  TLNGTWKFFW  VKDADARPVD  FWKQGFNDKG  WSNMPVPGVW120
ELNGFGDPIY  VNVGYAWRNQ  FKNNPPQVPV  ENNHVGSYRR  EIVVPADWKD  KDIVAHFGSV180
TSNMYLWVNG  RYVGYSEDSK  LEAEFDLTPY  LKPGQKNLIA  FQVFRWCDGT  YLEDQDFFRY240
SGVGRNCYLY  ARDKKRIEDI  RVIPDLDADY  KDGSLRVTLN  LKGSGNVGME  LLDATGKQVA300
AETMHGSGTV  VMNVENPHKW  TAETPYLYTL  RAILQGSGEV  IPVKVGFRKI  ELKDSQILVN360
GQPVLFKGAD  RHEMDPDGGY  VVSPERMMQD  IQIMKQFNLN  AVRTCHYPDD  NLWYDLCDKY420
GIYVVAEANV  ESHGMGYGDK  TLAKNPAYKK  AHLERNRRNV  QRGFNHPSII  FWSLGNEAGY480
GANFEAAYDW  VKAEDPSRAV  QYEQAGRKGK  TDIFCPMYYS  YDACRKYCED  ASADKPLIQC540
EYAHAMGNSE  GGFKEYWDLV  RKYPKYQGGF  IWDFVDQSVR  WTGKNGKMIY  AYGGDFNRFD600
ASDGNFCDNG  LISPDRVPNP  HMYEVGRIYQ  NIWTTPSDLK  NGEINVFNEY  FFRDLSAYYL660
EWEVLKGGKV  IRTGRVDDLN  IAPRQTSKIK  LDLGKICQCE  EWLLNISYKL  KNREGLLPAG720
HAVAKDQLTL  NPYKASAMEL  KNMEIPNIPV  MAPQVQDSDW  AYLIVSNDAF  RVEISKRSGY780
LTKYEVDGVD  MIKEGEALTP  NFWRAPTDND  FGAGLQRRYA  AWKKPEMKLI  SFNHRTENDL840
VVAEAVYDMP  SVSAALSLTY  VINNAGAIKV  TQKMTTDKNA  KISNMFRFGM  QMPMPRSFET900
VEYYGRGPVE  NYIDRNHAAD  LGIYRQSVSE  QFYSYIRPQE  NGTKTDIRWW  KMLNAAGRGI960
QVTAGAPFSA  SALHYTIESL  DEGLEKRQWH  SPEVEESDLT  NFCIDKVQMG  LGCEDSWGRI1020
ARPEYLLPYG  DYEFTFLLSP  VKNAIDLE1048

Predicted 3D structure by AlphaFold2 with pLDDT = 94.37 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRKGVVCRHK  EFIKFSSMNK  HFITGLFTVM  ALTANAQSFN  EWRDSEVNAV  NRAPMHTNYF60
AYESVDAASR  GVKEQSSNFM  TLNGTWKFFW  VKDADARPVD  FWKQGFNDKG  WSNMPVPGVW120
ELNGFGDPIY  VNVGYAWRNQ  FKNNPPQVPV  ENNHVGSYRR  EIVVPADWKD  KDIVAHFGSV180
TSNMYLWVNG  RYVGYSEDSK  LEAEFDLTPY  LKPGQKNLIA  FQVFRWCDGT  YLEDQDFFRY240
SGVGRNCYLY  ARDKKRIEDI  RVIPDLDADY  KDGSLRVTLN  LKGSGNVGME  LLDATGKQVA300
AETMHGSGTV  VMNVENPHKW  TAETPYLYTL  RAILQGSGEV  IPVKVGFRKI  ELKDSQILVN360
GQPVLFKGAD  RHEMDPDGGY  VVSPERMMQD  IQIMKQFNLN  AVRTCHYPDD  NLWYDLCDKY420
GIYVVAEANV  ESHGMGYGDK  TLAKNPAYKK  AHLERNRRNV  QRGFNHPSII  FWSLGNEAGY480
GANFEAAYDW  VKAEDPSRAV  QYEQAGRKGK  TDIFCPMYYS  YDACRKYCED  ASADKPLIQC540
EYAHAMGNSE  GGFKEYWDLV  RKYPKYQGGF  IWDFVDQSVR  WTGKNGKMIY  AYGGDFNRFD600
ASDGNFCDNG  LISPDRVPNP  HMYEVGRIYQ  NIWTTPSDLK  NGEINVFNEY  FFRDLSAYYL660
EWEVLKGGKV  IRTGRVDDLN  IAPRQTSKIK  LDLGKICQCE  EWLLNISYKL  KNREGLLPAG720
HAVAKDQLTL  NPYKASAMEL  KNMEIPNIPV  MAPQVQDSDW  AYLIVSNDAF  RVEISKRSGY780
LTKYEVDGVD  MIKEGEALTP  NFWRAPTDND  FGAGLQRRYA  AWKKPEMKLI  SFNHRTENDL840
VVAEAVYDMP  SVSAALSLTY  VINNAGAIKV  TQKMTTDKNA  KISNMFRFGM  QMPMPRSFET900
VEYYGRGPVE  NYIDRNHAAD  LGIYRQSVSE  QFYSYIRPQE  NGTKTDIRWW  KMLNAAGRGI960
QVTAGAPFSA  SALHYTIESL  DEGLEKRQWH  SPEVEESDLT  NFCIDKVQMG  LGCEDSWGRI1020
ARPEYLLPYG  DYEFTFLLSP  VKNAIDLE1048

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(64-919)

MRKGVVCRHK  EFIKFSSMNK  HFITGLFTVM  ALTANAQSFN  EWRDSEVNAV  NRAPMHTNYF60
AYESVDAASR  GVKEQSSNFM  TLNGTWKFFW  VKDADARPVD  FWKQGFNDKG  WSNMPVPGVW120
ELNGFGDPIY  VNVGYAWRNQ  FKNNPPQVPV  ENNHVGSYRR  EIVVPADWKD  KDIVAHFGSV180
TSNMYLWVNG  RYVGYSEDSK  LEAEFDLTPY  LKPGQKNLIA  FQVFRWCDGT  YLEDQDFFRY240
SGVGRNCYLY  ARDKKRIEDI  RVIPDLDADY  KDGSLRVTLN  LKGSGNVGME  LLDATGKQVA300
AETMHGSGTV  VMNVENPHKW  TAETPYLYTL  RAILQGSGEV  IPVKVGFRKI  ELKDSQILVN360
GQPVLFKGAD  RHEMDPDGGY  VVSPERMMQD  IQIMKQFNLN  AVRTCHYPDD  NLWYDLCDKY420
GIYVVAEANV  ESHGMGYGDK  TLAKNPAYKK  AHLERNRRNV  QRGFNHPSII  FWSLGNEAGY480
GANFEAAYDW  VKAEDPSRAV  QYEQAGRKGK  TDIFCPMYYS  YDACRKYCED  ASADKPLIQC540
EYAHAMGNSE  GGFKEYWDLV  RKYPKYQGGF  IWDFVDQSVR  WTGKNGKMIY  AYGGDFNRFD600
ASDGNFCDNG  LISPDRVPNP  HMYEVGRIYQ  NIWTTPSDLK  NGEINVFNEY  FFRDLSAYYL660
EWEVLKGGKV  IRTGRVDDLN  IAPRQTSKIK  LDLGKICQCE  EWLLNISYKL  KNREGLLPAG720
HAVAKDQLTL  NPYKASAMEL  KNMEIPNIPV  MAPQVQDSDW  AYLIVSNDAF  RVEISKRSGY780
LTKYEVDGVD  MIKEGEALTP  NFWRAPTDND  FGAGLQRRYA  AWKKPEMKLI  SFNHRTENDL840
VVAEAVYDMP  SVSAALSLTY  VINNAGAIKV  TQKMTTDKNA  KISNMFRFGM  QMPMPRSFET900
VEYYGRGPVE  NYIDRNHAAD  LGIYRQSVSE  QFYSYIRPQE  NGTKTDIRWW  KMLNAAGRGI960
QVTAGAPFSA  SALHYTIESL  DEGLEKRQWH  SPEVEESDLT  NFCIDKVQMG  LGCEDSWGRI1020
ARPEYLLPYG  DYEFTFLLSP  VKNAIDLE1048

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help