CAZyme3D

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Entry ID

Information for CAZyme ID: ADU86907.1

Basic Information

GenBank IDADU86907.1
FamilyGH5_4
Sequence Length722
UniProt IDH2BCH6(100,100)Download
Average pLDDT?80.34
CAZy50 ID36052
CAZy50 RepYes, ADU86907.1
Structure ClusterSC_GH5_clus263
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID77133
KingdomBacteria
Phylum
Class
Order
Family
Genus
Speciesuncultured bacterium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTKRSRKLCA  LITCIALIAT  LLFPGNGITQ  SKGATNLTAA  QIQRGMGLGF  NIGNTFDSSN60
NDMGCLVSNH  ELHWGNPAVT  QAYVDAIYDK  GFRSIRLPIT  WYEFITEDNG  TYSIKPEYLA120
RVKEVVDYAY  NKNMYVIINV  HHENWINRSD  LAASYNSISP  KLKGVWKVIA  EYFSDYDQRL180
IFEGMNEPRL  VGVEGVEWVG  NAEAYNVVNK  LDKDFISTVR  SVASPYKSTR  LLMVPSYAAS240
VNPVAYEKMD  MTMFNDPYVA  ASIHAYSPYN  FAMGNGDHSD  FSPYKAELES  IFAGLRTTFT300
SKKIPVILGE  FSSSNFNNQS  ARVAWAKCYM  EQAKKLGIPC  VLWDNDVIAM  QDDGEAHGYL360
NRATNKWYSE  SEPVVNALLS  TLNDSSIVWK  SESVYPIYKH  NATTSGTELN  VSEYFVFDNP420
SSIITSGKEI  AIKYTTKTPK  IALANGAWGN  WTEIMPTDLD  IDNKIAYFSC  DTMLNAWTSA480
DTIANMKILD  SSGNGIQLPA  YLISYSGERA  ETSEEDISSE  DNTTSETSQT  TQTSQSSQSS540
QTTQTSQTKP  DNSSESASSQ  DKSESKPNAT  QTIPSNSTTT  VTPSSEVESF  EIGTALENVK600
GTAKYKVMGK  TTDGTPMVQF  VASKSASSAT  VTVPATVNIN  GTACKVTSIA  PKAFYKNKKL660
KKIVIGANIV  RIGKQAFYGC  TNLKKVIIKK  KPKQIGKQAF  GKCNKLKKIS  IANKNVSAKK720
YK722

Predicted 3D structure by AlphaFold2 with pLDDT = 80.34 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTKRSRKLCA  LITCIALIAT  LLFPGNGITQ  SKGATNLTAA  QIQRGMGLGF  NIGNTFDSSN60
NDMGCLVSNH  ELHWGNPAVT  QAYVDAIYDK  GFRSIRLPIT  WYEFITEDNG  TYSIKPEYLA120
RVKEVVDYAY  NKNMYVIINV  HHENWINRSD  LAASYNSISP  KLKGVWKVIA  EYFSDYDQRL180
IFEGMNEPRL  VGVEGVEWVG  NAEAYNVVNK  LDKDFISTVR  SVASPYKSTR  LLMVPSYAAS240
VNPVAYEKMD  MTMFNDPYVA  ASIHAYSPYN  FAMGNGDHSD  FSPYKAELES  IFAGLRTTFT300
SKKIPVILGE  FSSSNFNNQS  ARVAWAKCYM  EQAKKLGIPC  VLWDNDVIAM  QDDGEAHGYL360
NRATNKWYSE  SEPVVNALLS  TLNDSSIVWK  SESVYPIYKH  NATTSGTELN  VSEYFVFDNP420
SSIITSGKEI  AIKYTTKTPK  IALANGAWGN  WTEIMPTDLD  IDNKIAYFSC  DTMLNAWTSA480
DTIANMKILD  SSGNGIQLPA  YLISYSGERA  ETSEEDISSE  DNTTSETSQT  TQTSQSSQSS540
QTTQTSQTKP  DNSSESASSQ  DKSESKPNAT  QTIPSNSTTT  VTPSSEVESF  EIGTALENVK600
GTAKYKVMGK  TTDGTPMVQF  VASKSASSAT  VTVPATVNIN  GTACKVTSIA  PKAFYKNKKL660
KKIVIGANIV  RIGKQAFYGC  TNLKKVIIKK  KPKQIGKQAF  GKCNKLKKIS  IANKNVSAKK720
YK722

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_4(71-346)

MTKRSRKLCA  LITCIALIAT  LLFPGNGITQ  SKGATNLTAA  QIQRGMGLGF  NIGNTFDSSN60
NDMGCLVSNH  ELHWGNPAVT  QAYVDAIYDK  GFRSIRLPIT  WYEFITEDNG  TYSIKPEYLA120
RVKEVVDYAY  NKNMYVIINV  HHENWINRSD  LAASYNSISP  KLKGVWKVIA  EYFSDYDQRL180
IFEGMNEPRL  VGVEGVEWVG  NAEAYNVVNK  LDKDFISTVR  SVASPYKSTR  LLMVPSYAAS240
VNPVAYEKMD  MTMFNDPYVA  ASIHAYSPYN  FAMGNGDHSD  FSPYKAELES  IFAGLRTTFT300
SKKIPVILGE  FSSSNFNNQS  ARVAWAKCYM  EQAKKLGIPC  VLWDNDVIAM  QDDGEAHGYL360
NRATNKWYSE  SEPVVNALLS  TLNDSSIVWK  SESVYPIYKH  NATTSGTELN  VSEYFVFDNP420
SSIITSGKEI  AIKYTTKTPK  IALANGAWGN  WTEIMPTDLD  IDNKIAYFSC  DTMLNAWTSA480
DTIANMKILD  SSGNGIQLPA  YLISYSGERA  ETSEEDISSE  DNTTSETSQT  TQTSQSSQSS540
QTTQTSQTKP  DNSSESASSQ  DKSESKPNAT  QTIPSNSTTT  VTPSSEVESF  EIGTALENVK600
GTAKYKVMGK  TTDGTPMVQF  VASKSASSAT  VTVPATVNIN  GTACKVTSIA  PKAFYKNKKL660
KKIVIGANIV  RIGKQAFYGC  TNLKKVIIKK  KPKQIGKQAF  GKCNKLKKIS  IANKNVSAKK720
YK722

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help