CAZyme3D

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Entry ID

Information for CAZyme ID: ADU65921.1

Basic Information

GenBank IDADU65921.1
FamilyGH102
Sequence Length358
UniProt IDE6W4E7(100,100)Download
Average pLDDT?88.84
CAZy50 ID127628
CAZy50 RepYes, ADU65921.1
Structure ClusterSC_GH102_clus9
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID653733
KingdomBacteria
PhylumChrysiogenota
ClassChrysiogenetes
OrderChrysiogenales
FamilyChrysiogenaceae
GenusDesulfurispirillum
SpeciesDesulfurispirillum indicum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLALFLTGCT  LKAPQEPPLL  KKSTWNELSG  LADDNLKEFW  QAFIRTCQQV  QTDRSDWTHT60
CQATSSQNMD  QRRILAFLHE  HFEPYRVNPA  AAQSRTLITG  YYEPLLQGSL  TSSDHFRYPV120
HRVPEDMLRI  ELGVQVQGTD  PRGRLENRRV  LPYWTRRDID  QGKARTPQPI  AWVADPVDLF180
FLHVQGSGRI  QLTDGSFVSV  GFADHNGHPY  RSIGRVLIDE  GAISREEISM  QAIRAWLRQN240
PERSMPLLHH  NPRYIFFREL  DPLRSPLGSA  GVVLTPWRSV  ATDPASIPTG  TPVFLQTRNP300
LSDEPITILT  VAQDRGAAIK  GPARIDLFFG  FGQDAELLAG  HMKEQGNLYI  FLPKQPGP358

Predicted 3D structure by AlphaFold2 with pLDDT = 88.84 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLALFLTGCT  LKAPQEPPLL  KKSTWNELSG  LADDNLKEFW  QAFIRTCQQV  QTDRSDWTHT60
CQATSSQNMD  QRRILAFLHE  HFEPYRVNPA  AAQSRTLITG  YYEPLLQGSL  TSSDHFRYPV120
HRVPEDMLRI  ELGVQVQGTD  PRGRLENRRV  LPYWTRRDID  QGKARTPQPI  AWVADPVDLF180
FLHVQGSGRI  QLTDGSFVSV  GFADHNGHPY  RSIGRVLIDE  GAISREEISM  QAIRAWLRQN240
PERSMPLLHH  NPRYIFFREL  DPLRSPLGSA  GVVLTPWRSV  ATDPASIPTG  TPVFLQTRNP300
LSDEPITILT  VAQDRGAAIK  GPARIDLFFG  FGQDAELLAG  HMKEQGNLYI  FLPKQPGP358

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH102(106-258)

MLALFLTGCT  LKAPQEPPLL  KKSTWNELSG  LADDNLKEFW  QAFIRTCQQV  QTDRSDWTHT60
CQATSSQNMD  QRRILAFLHE  HFEPYRVNPA  AAQSRTLITG  YYEPLLQGSL  TSSDHFRYPV120
HRVPEDMLRI  ELGVQVQGTD  PRGRLENRRV  LPYWTRRDID  QGKARTPQPI  AWVADPVDLF180
FLHVQGSGRI  QLTDGSFVSV  GFADHNGHPY  RSIGRVLIDE  GAISREEISM  QAIRAWLRQN240
PERSMPLLHH  NPRYIFFREL  DPLRSPLGSA  GVVLTPWRSV  ATDPASIPTG  TPVFLQTRNP300
LSDEPITILT  VAQDRGAAIK  GPARIDLFFG  FGQDAELLAG  HMKEQGNLYI  FLPKQPGP358

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help