CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: ADU21136.1

Basic Information

GenBank IDADU21136.1
FamilyCE2
Sequence Length488
UniProt IDE6UGU9(100,100)Download
Average pLDDT?78.26
CAZy50 ID71419
CAZy50 RepYes, ADU21136.1
Structure ClusterSC_CE2_clus25
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID697329
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus albus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKISRFFAGL  CSAALAASIL  PVSAEESKTA  FCEAVPDNVR  ILGRTVYNDD  SLWLANSVSG60
VEFTVTGTQV  TFNLNVSGDP  TRIGVYLNGQ  LYQRGLIGGS  SKKGSVTVPL  AEGENTVRLI120
KLSESMQSEL  GIDSIETDAG  STIKPTSAKE  RKLEFIGDSI  TCGYGIDLPL  KDPSTGENNK180
FSTLSEDASK  TYAYQIASMF  DSDVDLFSMS  GCGVWCNYGG  SRDHTMEKYY  RKTSLNTWNS240
ISSQDYVPIQ  DFDWDHSQYQ  PDCIVIDLGT  NDWTYFDSHE  NEKEKFEDSY  TDLLKLVREC300
SPDAKIVCTL  GMMGAELYPQ  IKNAVDEYKS  DTGDKEVYTL  KLGQIDPAQE  GYGVDYHPLA360
ASNTRVAENE  LGPFIAGIMG  WDLGPMPDDG  TLTHTPDDLT  VGEYHEQPAD  NVSDQSESSD420
PESDVSESST  SSAVSSTSSA  SSVSESTSSF  RTTTNPIQSE  DNPTTGMAGG  MAMIALMGGA480
VIASKRKK488

Predicted 3D structure by AlphaFold2 with pLDDT = 78.26 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKISRFFAGL  CSAALAASIL  PVSAEESKTA  FCEAVPDNVR  ILGRTVYNDD  SLWLANSVSG60
VEFTVTGTQV  TFNLNVSGDP  TRIGVYLNGQ  LYQRGLIGGS  SKKGSVTVPL  AEGENTVRLI120
KLSESMQSEL  GIDSIETDAG  STIKPTSAKE  RKLEFIGDSI  TCGYGIDLPL  KDPSTGENNK180
FSTLSEDASK  TYAYQIASMF  DSDVDLFSMS  GCGVWCNYGG  SRDHTMEKYY  RKTSLNTWNS240
ISSQDYVPIQ  DFDWDHSQYQ  PDCIVIDLGT  NDWTYFDSHE  NEKEKFEDSY  TDLLKLVREC300
SPDAKIVCTL  GMMGAELYPQ  IKNAVDEYKS  DTGDKEVYTL  KLGQIDPAQE  GYGVDYHPLA360
ASNTRVAENE  LGPFIAGIMG  WDLGPMPDDG  TLTHTPDDLT  VGEYHEQPAD  NVSDQSESSD420
PESDVSESST  SSAVSSTSSA  SSVSESTSSF  RTTTNPIQSE  DNPTTGMAGG  MAMIALMGGA480
VIASKRKK488

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE2(152-368)

MKISRFFAGL  CSAALAASIL  PVSAEESKTA  FCEAVPDNVR  ILGRTVYNDD  SLWLANSVSG60
VEFTVTGTQV  TFNLNVSGDP  TRIGVYLNGQ  LYQRGLIGGS  SKKGSVTVPL  AEGENTVRLI120
KLSESMQSEL  GIDSIETDAG  STIKPTSAKE  RKLEFIGDSI  TCGYGIDLPL  KDPSTGENNK180
FSTLSEDASK  TYAYQIASMF  DSDVDLFSMS  GCGVWCNYGG  SRDHTMEKYY  RKTSLNTWNS240
ISSQDYVPIQ  DFDWDHSQYQ  PDCIVIDLGT  NDWTYFDSHE  NEKEKFEDSY  TDLLKLVREC300
SPDAKIVCTL  GMMGAELYPQ  IKNAVDEYKS  DTGDKEVYTL  KLGQIDPAQE  GYGVDYHPLA360
ASNTRVAENE  LGPFIAGIMG  WDLGPMPDDG  TLTHTPDDLT  VGEYHEQPAD  NVSDQSESSD420
PESDVSESST  SSAVSSTSSA  SSVSESTSSF  RTTTNPIQSE  DNPTTGMAGG  MAMIALMGGA480
VIASKRKK488

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help