CAZyme3D

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Entry ID

Information for CAZyme ID: ADU21113.1

Basic Information

GenBank IDADU21113.1
FamilyGH5_4
Sequence Length611
UniProt IDE6UG86(100,100)Download
Average pLDDT?91.36
CAZy50 ID50801
CAZy50 RepYes, ADU21113.1
Structure ClusterSC_GH5_clus109
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID697329
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus albus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKAYFKKILS  LVTAGIITAS  ALPFVSAQAK  DVSSMTAVEI  AKDMGLGWNL  GNTLEAHDGT60
NHKKMGLESE  TFWGNPKASK  ALFDAVKAKG  FRTIRIPVTW  YPHADANYNI  DTAWMNRVKQ120
VVDWAVDENT  YVILNIHHEE  WNTPTNANYA  AASKELKAFW  KQIATEFRDY  DRHLIFEGMN180
EPRNYGGAHE  WDGGTDDMRK  VINKLDKDFV  DTVRSTGGKN  KTRCLMIPTY  AASSTTVAMR240
ALSIPDDPNV  MVSIHAYSPY  NFTMNTGSGA  TSVFGSAQEN  ELKQLFNNIN  SIFLSNGKAV300
VIGEFSSSNK  NNTDERVKWA  KSYATLAKQK  GIPIVLWDNN  SPKDNYNNGE  GHGYINRKTL360
AWYSTAEPVV  DSLVKNYYGS  SVSKTDLSKC  KAVLSQTKYF  YDGTQHKPSV  TVTYNGKTLT420
NGTDYTAAYS  GGKAIGTGTV  TLTGKGSYTG  TVKLTFTVAE  KTIGDCKITL  SQNSYTYDGN480
EHKPAVTVTF  EGKRLNEGSD  YTIAYENCRN  IGDAYVTVTG  TGSFKGSSKV  RYCIDPADLS540
GYKLGDVNFD  SKITVTDVTL  TSAQVKAKIF  MSESRRRAAD  INGDGRVNVS  DLSLMAAHVK600
SKKSLPDKNI  A611

Predicted 3D structure by AlphaFold2 with pLDDT = 91.36 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKAYFKKILS  LVTAGIITAS  ALPFVSAQAK  DVSSMTAVEI  AKDMGLGWNL  GNTLEAHDGT60
NHKKMGLESE  TFWGNPKASK  ALFDAVKAKG  FRTIRIPVTW  YPHADANYNI  DTAWMNRVKQ120
VVDWAVDENT  YVILNIHHEE  WNTPTNANYA  AASKELKAFW  KQIATEFRDY  DRHLIFEGMN180
EPRNYGGAHE  WDGGTDDMRK  VINKLDKDFV  DTVRSTGGKN  KTRCLMIPTY  AASSTTVAMR240
ALSIPDDPNV  MVSIHAYSPY  NFTMNTGSGA  TSVFGSAQEN  ELKQLFNNIN  SIFLSNGKAV300
VIGEFSSSNK  NNTDERVKWA  KSYATLAKQK  GIPIVLWDNN  SPKDNYNNGE  GHGYINRKTL360
AWYSTAEPVV  DSLVKNYYGS  SVSKTDLSKC  KAVLSQTKYF  YDGTQHKPSV  TVTYNGKTLT420
NGTDYTAAYS  GGKAIGTGTV  TLTGKGSYTG  TVKLTFTVAE  KTIGDCKITL  SQNSYTYDGN480
EHKPAVTVTF  EGKRLNEGSD  YTIAYENCRN  IGDAYVTVTG  TGSFKGSSKV  RYCIDPADLS540
GYKLGDVNFD  SKITVTDVTL  TSAQVKAKIF  MSESRRRAAD  INGDGRVNVS  DLSLMAAHVK600
SKKSLPDKNI  A611

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_4(69-340)+dockerin(580-597)

MKAYFKKILS  LVTAGIITAS  ALPFVSAQAK  DVSSMTAVEI  AKDMGLGWNL  GNTLEAHDGT60
NHKKMGLESE  TFWGNPKASK  ALFDAVKAKG  FRTIRIPVTW  YPHADANYNI  DTAWMNRVKQ120
VVDWAVDENT  YVILNIHHEE  WNTPTNANYA  AASKELKAFW  KQIATEFRDY  DRHLIFEGMN180
EPRNYGGAHE  WDGGTDDMRK  VINKLDKDFV  DTVRSTGGKN  KTRCLMIPTY  AASSTTVAMR240
ALSIPDDPNV  MVSIHAYSPY  NFTMNTGSGA  TSVFGSAQEN  ELKQLFNNIN  SIFLSNGKAV300
VIGEFSSSNK  NNTDERVKWA  KSYATLAKQK  GIPIVLWDNN  SPKDNYNNGE  GHGYINRKTL360
AWYSTAEPVV  DSLVKNYYGS  SVSKTDLSKC  KAVLSQTKYF  YDGTQHKPSV  TVTYNGKTLT420
NGTDYTAAYS  GGKAIGTGTV  TLTGKGSYTG  TVKLTFTVAE  KTIGDCKITL  SQNSYTYDGN480
EHKPAVTVTF  EGKRLNEGSD  YTIAYENCRN  IGDAYVTVTG  TGSFKGSSKV  RYCIDPADLS540
GYKLGDVNFD  SKITVTDVTL  TSAQVKAKIF  MSESRRRAAD  INGDGRVNVS  DLSLMAAHVK600
SKKSLPDKNI  A611

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help