Information for CAZyme ID: ADN68540.1
Basic Information
GenBank ID | ADN68540.1 |
Family | GT13 |
Sequence Length | 444 |
UniProt ID | G0WVT5(100,100)![]() |
Average pLDDT? | 82.23 |
CAZy50 ID | 81603 |
CAZy50 Rep | Yes, ADN68540.1 |
Structure Cluster | SC_GT13_clus17 |
EC Number(s) | 2.4.1.101 |
Substrates(s) | - |
Taxonomy
Tax ID | 2850 |
Kingdom | Eukaryota |
Phylum | Bacillariophyta |
Class | Bacillariophyceae |
Order | Naviculales |
Family | Phaeodactylaceae |
Genus | Phaeodactylum |
Species | Phaeodactylum tricornutum |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MRLWKRTTSG VPPPRRRRRG GREERLAIGL LLTLAVVWGT VLVGTLVALV ASPTKSVPTF | 60 |
PTVPTDSRPS AAFVVSDAPG AYESPLLVFT CRRDQYLRET LRDIWNYIPT DCSVGCPLVI | 120 |
SQDGNDPAVR RVVREFTDEF ATKNVPVIHW THTSALRGST NGYQALAIHY GWALRRVFDG | 180 |
QTLSGSVHGA KHGTPQRVII LEEDLHVAPD FFDYFAATAP LLDHDSSLLA VSAFHDNGFA | 240 |
HNVRNASRIL RSDFFPGLGW MMNRRLWVDE LQSKWPGGYW DDWLREPAQR QDRAILRPEI | 300 |
SRTYHFGTEG GTSSNQFGSH LSKILLNRET VDWSKAADLE AQLRPEVYDP AYWAMVQAST | 360 |
LTYTIPDALE QAKKSNARLQ YTTIEQFKYL AHKLKLMADE KANVPRTAYK GIVETRPHGA | 420 |
DYFLFLTPPL AELQKEFDIP SPKR | 444 |
Predicted 3D structure by AlphaFold2 with pLDDT = 82.23 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MRLWKRTTSG VPPPRRRRRG GREERLAIGL LLTLAVVWGT VLVGTLVALV ASPTKSVPTF | 60 |
PTVPTDSRPS AAFVVSDAPG AYESPLLVFT CRRDQYLRET LRDIWNYIPT DCSVGCPLVI | 120 |
SQDGNDPAVR RVVREFTDEF ATKNVPVIHW THTSALRGST NGYQALAIHY GWALRRVFDG | 180 |
QTLSGSVHGA KHGTPQRVII LEEDLHVAPD FFDYFAATAP LLDHDSSLLA VSAFHDNGFA | 240 |
HNVRNASRIL RSDFFPGLGW MMNRRLWVDE LQSKWPGGYW DDWLREPAQR QDRAILRPEI | 300 |
SRTYHFGTEG GTSSNQFGSH LSKILLNRET VDWSKAADLE AQLRPEVYDP AYWAMVQAST | 360 |
LTYTIPDALE QAKKSNARLQ YTTIEQFKYL AHKLKLMADE KANVPRTAYK GIVETRPHGA | 420 |
DYFLFLTPPL AELQKEFDIP SPKR | 444 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.