CAZyme3D

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Entry ID

Information for CAZyme ID: ADN68540.1

Basic Information

GenBank IDADN68540.1
FamilyGT13
Sequence Length444
UniProt IDG0WVT5(100,100)Download
Average pLDDT?82.23
CAZy50 ID81603
CAZy50 RepYes, ADN68540.1
Structure ClusterSC_GT13_clus17
EC Number(s)2.4.1.101
Substrates(s)-

Taxonomy

Tax ID2850
KingdomEukaryota
PhylumBacillariophyta
ClassBacillariophyceae
OrderNaviculales
FamilyPhaeodactylaceae
GenusPhaeodactylum
SpeciesPhaeodactylum tricornutum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRLWKRTTSG  VPPPRRRRRG  GREERLAIGL  LLTLAVVWGT  VLVGTLVALV  ASPTKSVPTF60
PTVPTDSRPS  AAFVVSDAPG  AYESPLLVFT  CRRDQYLRET  LRDIWNYIPT  DCSVGCPLVI120
SQDGNDPAVR  RVVREFTDEF  ATKNVPVIHW  THTSALRGST  NGYQALAIHY  GWALRRVFDG180
QTLSGSVHGA  KHGTPQRVII  LEEDLHVAPD  FFDYFAATAP  LLDHDSSLLA  VSAFHDNGFA240
HNVRNASRIL  RSDFFPGLGW  MMNRRLWVDE  LQSKWPGGYW  DDWLREPAQR  QDRAILRPEI300
SRTYHFGTEG  GTSSNQFGSH  LSKILLNRET  VDWSKAADLE  AQLRPEVYDP  AYWAMVQAST360
LTYTIPDALE  QAKKSNARLQ  YTTIEQFKYL  AHKLKLMADE  KANVPRTAYK  GIVETRPHGA420
DYFLFLTPPL  AELQKEFDIP  SPKR444

Predicted 3D structure by AlphaFold2 with pLDDT = 82.23 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRLWKRTTSG  VPPPRRRRRG  GREERLAIGL  LLTLAVVWGT  VLVGTLVALV  ASPTKSVPTF60
PTVPTDSRPS  AAFVVSDAPG  AYESPLLVFT  CRRDQYLRET  LRDIWNYIPT  DCSVGCPLVI120
SQDGNDPAVR  RVVREFTDEF  ATKNVPVIHW  THTSALRGST  NGYQALAIHY  GWALRRVFDG180
QTLSGSVHGA  KHGTPQRVII  LEEDLHVAPD  FFDYFAATAP  LLDHDSSLLA  VSAFHDNGFA240
HNVRNASRIL  RSDFFPGLGW  MMNRRLWVDE  LQSKWPGGYW  DDWLREPAQR  QDRAILRPEI300
SRTYHFGTEG  GTSSNQFGSH  LSKILLNRET  VDWSKAADLE  AQLRPEVYDP  AYWAMVQAST360
LTYTIPDALE  QAKKSNARLQ  YTTIEQFKYL  AHKLKLMADE  KANVPRTAYK  GIVETRPHGA420
DYFLFLTPPL  AELQKEFDIP  SPKR444

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT13(82-429)

MRLWKRTTSG  VPPPRRRRRG  GREERLAIGL  LLTLAVVWGT  VLVGTLVALV  ASPTKSVPTF60
PTVPTDSRPS  AAFVVSDAPG  AYESPLLVFT  CRRDQYLRET  LRDIWNYIPT  DCSVGCPLVI120
SQDGNDPAVR  RVVREFTDEF  ATKNVPVIHW  THTSALRGST  NGYQALAIHY  GWALRRVFDG180
QTLSGSVHGA  KHGTPQRVII  LEEDLHVAPD  FFDYFAATAP  LLDHDSSLLA  VSAFHDNGFA240
HNVRNASRIL  RSDFFPGLGW  MMNRRLWVDE  LQSKWPGGYW  DDWLREPAQR  QDRAILRPEI300
SRTYHFGTEG  GTSSNQFGSH  LSKILLNRET  VDWSKAADLE  AQLRPEVYDP  AYWAMVQAST360
LTYTIPDALE  QAKKSNARLQ  YTTIEQFKYL  AHKLKLMADE  KANVPRTAYK  GIVETRPHGA420
DYFLFLTPPL  AELQKEFDIP  SPKR444

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help