CAZyme3D

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Entry ID

Information for CAZyme ID: ADM98893.1

Basic Information

GenBank IDADM98893.1
FamilyPL1_8
Sequence Length310
UniProt IDE0SG38(100,100)Download
Average pLDDT?86.48
CAZy50 ID151562
CAZy50 RepNo, QVH44630.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID198628
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya dadantii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQKNTMPKRT  VMPVIDTAFS  RRHLLKLAVL  LPAFPYARIA  QSDSGVTGYA  KMKQVSGGGV60
GGEIVYVNNV  KALAFHLGGP  AHKNIIITCT  LKAPDKYTIL  LGSNKTLIGQ  LPGITLYNIY120
LVSSHNQGNV  IIKNMTFLHD  KKINGNNDIQ  LRISSGEGYW  LDHCNFMGHE  WSVNDGAEDK180
HIYFGENADF  ITISNCVFAN  HRYGCIFGYP  VDGNSRFKGK  PRITICNNYY  HNLYVRAPGL240
FRYGEFSVFN  NVIRGFHLGF  TVDGGARVYS  SNNHFYSTLK  NFSVVDYKQD  YLHSQNDSIN300
DQKINKTWGT  310

Predicted 3D structure by AlphaFold2 with pLDDT = 86.48 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL1_8(85-275)

MQKNTMPKRT  VMPVIDTAFS  RRHLLKLAVL  LPAFPYARIA  QSDSGVTGYA  KMKQVSGGGV60
GGEIVYVNNV  KALAFHLGGP  AHKNIIITCT  LKAPDKYTIL  LGSNKTLIGQ  LPGITLYNIY120
LVSSHNQGNV  IIKNMTFLHD  KKINGNNDIQ  LRISSGEGYW  LDHCNFMGHE  WSVNDGAEDK180
HIYFGENADF  ITISNCVFAN  HRYGCIFGYP  VDGNSRFKGK  PRITICNNYY  HNLYVRAPGL240
FRYGEFSVFN  NVIRGFHLGF  TVDGGARVYS  SNNHFYSTLK  NFSVVDYKQD  YLHSQNDSIN300
DQKINKTWGT  310

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help