CAZyme3D

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Entry ID

Information for CAZyme ID: ADK23914.2

Basic Information

GenBank IDADK23914.2
FamilyGH16_4
Sequence Length351
UniProt IDD9J063(100,100)Download
Average pLDDT?92.88
CAZy50 ID131267
CAZy50 RepYes, ADK23914.2
Structure ClusterSC_GH16_clus253
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID112780
KingdomEukaryota
PhylumArthropoda
ClassBranchiopoda
OrderAnostraca
FamilyArtemiidae
GenusArtemia
SpeciesArtemia sinica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

KSYFPNIMEK  TLLWLSCIVS  LGLCQNLIWQ  EEFDTLDTNV  WEHLITGWRG  GNWEFQYYSD60
RPENSFVRDG  ILHIKPTLTA  DRFSEEFLYN  GVLDLNQEGC  NINIDNGCII  YSGDEIINPI120
QSARLRSSIS  FSFTYGRVDV  RAKMPMGDWI  WPAIWLLPTD  EVYGGWPMSG  EIDLIEVRGN180
TDFKCGDKDI  GIQMMGSTLH  WGPAWDQNQY  WRTAWEKHIE  SGTWHDDYHI  YSFEWTADGF240
RFYIDNQEWA  SLYPPQGGFW  ELGELNGQNI  WASGTKMAPF  DKPFHFVLNV  ATGGNFFPDS300
CVNGAYDKPW  YAGEPTSMRS  FWEARDSWLP  TWSAETEQNE  MLIDYIRVYE  I351

Predicted 3D structure by AlphaFold2 with pLDDT = 92.88 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

KSYFPNIMEK  TLLWLSCIVS  LGLCQNLIWQ  EEFDTLDTNV  WEHLITGWRG  GNWEFQYYSD60
RPENSFVRDG  ILHIKPTLTA  DRFSEEFLYN  GVLDLNQEGC  NINIDNGCII  YSGDEIINPI120
QSARLRSSIS  FSFTYGRVDV  RAKMPMGDWI  WPAIWLLPTD  EVYGGWPMSG  EIDLIEVRGN180
TDFKCGDKDI  GIQMMGSTLH  WGPAWDQNQY  WRTAWEKHIE  SGTWHDDYHI  YSFEWTADGF240
RFYIDNQEWA  SLYPPQGGFW  ELGELNGQNI  WASGTKMAPF  DKPFHFVLNV  ATGGNFFPDS300
CVNGAYDKPW  YAGEPTSMRS  FWEARDSWLP  TWSAETEQNE  MLIDYIRVYE  I351

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH16_4(31-349)

KSYFPNIMEK  TLLWLSCIVS  LGLCQNLIWQ  EEFDTLDTNV  WEHLITGWRG  GNWEFQYYSD60
RPENSFVRDG  ILHIKPTLTA  DRFSEEFLYN  GVLDLNQEGC  NINIDNGCII  YSGDEIINPI120
QSARLRSSIS  FSFTYGRVDV  RAKMPMGDWI  WPAIWLLPTD  EVYGGWPMSG  EIDLIEVRGN180
TDFKCGDKDI  GIQMMGSTLH  WGPAWDQNQY  WRTAWEKHIE  SGTWHDDYHI  YSFEWTADGF240
RFYIDNQEWA  SLYPPQGGFW  ELGELNGQNI  WASGTKMAPF  DKPFHFVLNV  ATGGNFFPDS300
CVNGAYDKPW  YAGEPTSMRS  FWEARDSWLP  TWSAETEQNE  MLIDYIRVYE  I351

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help