CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: ADK13670.1

Basic Information

GenBank IDADK13670.1
FamilyGH130
Sequence Length350
UniProt IDD8GN46(100,100)Download
Average pLDDT?96.62
CAZy50 ID131848
CAZy50 RepYes, ADK13670.1
Structure ClusterSC_GH130_clus8
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID748727
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium ljungdahlii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDIRRYKGNP  IITCSDITPS  SKDFQVIGVF  NPGAAEYNGE  VVLALRIAER  VEQETEDYMR60
VPLLDENNKL  KFVTINKKDE  NYDFSDSRVI  KKVGSNVDFD  YLTSMSHIRI  ARSCDGVNFK120
IDEVPFIFPE  NKYESFGVED  PRITKIDDNY  YMTYSAVSKY  GIVVELAVTN  DFKSYKKLGN180
IFNTENKDAV  IFPEKIGEKY  FALNRPVSKS  TGNPVIWISE  SDNLINWGNH  KILACTRESS240
WDSSKVGAGI  PPIKTDEGWL  ELYHGVDDME  HYSMGALLLD  TNCPEKVIGR  SKEPILRPEE300
NYEKSGFFSD  VIFPCGSVLR  KDELYIYYGI  CDNSIGLAIV  KIKDILNTLD  350

Predicted 3D structure by AlphaFold2 with pLDDT = 96.62 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MDIRRYKGNP  IITCSDITPS  SKDFQVIGVF  NPGAAEYNGE  VVLALRIAER  VEQETEDYMR60
VPLLDENNKL  KFVTINKKDE  NYDFSDSRVI  KKVGSNVDFD  YLTSMSHIRI  ARSCDGVNFK120
IDEVPFIFPE  NKYESFGVED  PRITKIDDNY  YMTYSAVSKY  GIVVELAVTN  DFKSYKKLGN180
IFNTENKDAV  IFPEKIGEKY  FALNRPVSKS  TGNPVIWISE  SDNLINWGNH  KILACTRESS240
WDSSKVGAGI  PPIKTDEGWL  ELYHGVDDME  HYSMGALLLD  TNCPEKVIGR  SKEPILRPEE300
NYEKSGFFSD  VIFPCGSVLR  KDELYIYYGI  CDNSIGLAIV  KIKDILNTLD  350

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH130(4-349)

MDIRRYKGNP  IITCSDITPS  SKDFQVIGVF  NPGAAEYNGE  VVLALRIAER  VEQETEDYMR60
VPLLDENNKL  KFVTINKKDE  NYDFSDSRVI  KKVGSNVDFD  YLTSMSHIRI  ARSCDGVNFK120
IDEVPFIFPE  NKYESFGVED  PRITKIDDNY  YMTYSAVSKY  GIVVELAVTN  DFKSYKKLGN180
IFNTENKDAV  IFPEKIGEKY  FALNRPVSKS  TGNPVIWISE  SDNLINWGNH  KILACTRESS240
WDSSKVGAGI  PPIKTDEGWL  ELYHGVDDME  HYSMGALLLD  TNCPEKVIGR  SKEPILRPEE300
NYEKSGFFSD  VIFPCGSVLR  KDELYIYYGI  CDNSIGLAIV  KIKDILNTLD  350

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help