CAZyme3D

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Entry ID

Information for CAZyme ID: ADI19485.1

Basic Information

GenBank IDADI19485.1
FamilyGH156
Sequence Length548
UniProt IDE0XYJ4(100,100)Download
Average pLDDT?89.89
CAZy50 ID59836
CAZy50 RepYes, ADI19485.1
Structure ClusterSC_GH156_clus9
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID710747
KingdomBacteria
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
Family
Genus
Speciesuncultured Planctomycetales bacterium HF0500_40D21

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNAPPELSRR  TFLAAAGAGL  VGPRLAQAAE  PHPRPVALGQ  KHHEAVNRKR  RIAVQYDAWS60
QLGHDFAEWL  DYRFDYIDEP  GTQIDSIWWD  ITALGDATYP  SKILKPLRQV  GLDRWRKQGI120
DWVGQLVAET  RKRKREVFWS  HRISEVELND  DGTGAGWNGK  PHPIKQAHPD  WVIKTWWKQG180
LWNLASAGVR  DFKVRVLREL  ATNYDFDGFQ  IDFARHIPCL  PPGRQWELRD  HVTRFMRDMR240
LMLQQVAEKR  KRPILLAARI  PCDLAGCRHD  GFDIAEWARQ  NLVDILTLGS  RSIDCDIDGF300
RRLTRGRNIK  LQPCLDDHHA  TDAYQYPPIE  YFRGVAANWW  RQGADSLLTF  NWSNADPQFC360
RKMDKTPGPL  SHQQAYHEIG  SPGSLKDKDK  IFVVQRRGGY  PWAEGAFNRN  DRAVLPLQLS420
EADSTATVSL  HVGDHLATSA  DRLEQVLLRV  IVFGTVDKKT  LDVKFNGVPT  RPITHDVSWK480
DRQIFSPRPQ  PSSGGADGWK  VDPKQKLTRL  DFRIPPRLCK  AADNQVSLRS  SGKKTIKLEK540
VELHVDYA548

Predicted 3D structure by AlphaFold2 with pLDDT = 89.89 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNAPPELSRR  TFLAAAGAGL  VGPRLAQAAE  PHPRPVALGQ  KHHEAVNRKR  RIAVQYDAWS60
QLGHDFAEWL  DYRFDYIDEP  GTQIDSIWWD  ITALGDATYP  SKILKPLRQV  GLDRWRKQGI120
DWVGQLVAET  RKRKREVFWS  HRISEVELND  DGTGAGWNGK  PHPIKQAHPD  WVIKTWWKQG180
LWNLASAGVR  DFKVRVLREL  ATNYDFDGFQ  IDFARHIPCL  PPGRQWELRD  HVTRFMRDMR240
LMLQQVAEKR  KRPILLAARI  PCDLAGCRHD  GFDIAEWARQ  NLVDILTLGS  RSIDCDIDGF300
RRLTRGRNIK  LQPCLDDHHA  TDAYQYPPIE  YFRGVAANWW  RQGADSLLTF  NWSNADPQFC360
RKMDKTPGPL  SHQQAYHEIG  SPGSLKDKDK  IFVVQRRGGY  PWAEGAFNRN  DRAVLPLQLS420
EADSTATVSL  HVGDHLATSA  DRLEQVLLRV  IVFGTVDKKT  LDVKFNGVPT  RPITHDVSWK480
DRQIFSPRPQ  PSSGGADGWK  VDPKQKLTRL  DFRIPPRLCK  AADNQVSLRS  SGKKTIKLEK540
VELHVDYA548

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH156(116-545)

MNAPPELSRR  TFLAAAGAGL  VGPRLAQAAE  PHPRPVALGQ  KHHEAVNRKR  RIAVQYDAWS60
QLGHDFAEWL  DYRFDYIDEP  GTQIDSIWWD  ITALGDATYP  SKILKPLRQV  GLDRWRKQGI120
DWVGQLVAET  RKRKREVFWS  HRISEVELND  DGTGAGWNGK  PHPIKQAHPD  WVIKTWWKQG180
LWNLASAGVR  DFKVRVLREL  ATNYDFDGFQ  IDFARHIPCL  PPGRQWELRD  HVTRFMRDMR240
LMLQQVAEKR  KRPILLAARI  PCDLAGCRHD  GFDIAEWARQ  NLVDILTLGS  RSIDCDIDGF300
RRLTRGRNIK  LQPCLDDHHA  TDAYQYPPIE  YFRGVAANWW  RQGADSLLTF  NWSNADPQFC360
RKMDKTPGPL  SHQQAYHEIG  SPGSLKDKDK  IFVVQRRGGY  PWAEGAFNRN  DRAVLPLQLS420
EADSTATVSL  HVGDHLATSA  DRLEQVLLRV  IVFGTVDKKT  LDVKFNGVPT  RPITHDVSWK480
DRQIFSPRPQ  PSSGGADGWK  VDPKQKLTRL  DFRIPPRLCK  AADNQVSLRS  SGKKTIKLEK540
VELHVDYA548

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help