CAZyme3D

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Entry ID

Information for CAZyme ID: ADG79999.1

Basic Information

GenBank IDADG79999.1
FamilyGH5_13
Sequence Length414
UniProt IDD5UWK0(100,100)Download
Average pLDDT?85.95
CAZy50 ID91812
CAZy50 RepYes, ADG79999.1
Structure ClusterSC_GH5_clus305
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID521096
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyTsukamurellaceae
GenusTsukamurella
SpeciesTsukamurella paurometabola

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAAATVPATM  LAARAAADPG  SGAGSGGTVP  GTPGAVPSVP  ATRWTPERAQ  QWREQAGWMV60
GCNFINANAG  NQFEMFQAQT  FDTNRINTEL  AWARGLGMSV  IRVFLQDQLW  TADPAGFTQR120
LDTFLSIASA  NGIRTMFVLF  DSCWDPNPKP  GVQREPTPGV  HNSTWVQSPG  AAGLTNADTS180
ALQAYATGVV  KAFANDPRVV  AWDVWNEPEN  LADSYPLSPP  DKVARVAQLL  PKAFEWARAG240
NPSQPLTSGV  WADTRPEIRT  IQLEQSDVIS  FHSYDPPEKF  RSMAADLAKE  GRPLLLTEYM300
ARAQGSTIET  ILPICKELKI  DAMQWGFVAG  RSQTYYPWDS  WKQPYVGARQ  PREWFHDILW360
PDGRPYRDSE  VATIRQLTAG  TTAPAPATQA  PAQPAPPQQQ  AAAPQAPQQP  PTAQ414

Predicted 3D structure by AlphaFold2 with pLDDT = 85.95 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MAAATVPATM  LAARAAADPG  SGAGSGGTVP  GTPGAVPSVP  ATRWTPERAQ  QWREQAGWMV60
GCNFINANAG  NQFEMFQAQT  FDTNRINTEL  AWARGLGMSV  IRVFLQDQLW  TADPAGFTQR120
LDTFLSIASA  NGIRTMFVLF  DSCWDPNPKP  GVQREPTPGV  HNSTWVQSPG  AAGLTNADTS180
ALQAYATGVV  KAFANDPRVV  AWDVWNEPEN  LADSYPLSPP  DKVARVAQLL  PKAFEWARAG240
NPSQPLTSGV  WADTRPEIRT  IQLEQSDVIS  FHSYDPPEKF  RSMAADLAKE  GRPLLLTEYM300
ARAQGSTIET  ILPICKELKI  DAMQWGFVAG  RSQTYYPWDS  WKQPYVGARQ  PREWFHDILW360
PDGRPYRDSE  VATIRQLTAG  TTAPAPATQA  PAQPAPPQQQ  AAAPQAPQQP  PTAQ414

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_13(71-334)

MAAATVPATM  LAARAAADPG  SGAGSGGTVP  GTPGAVPSVP  ATRWTPERAQ  QWREQAGWMV60
GCNFINANAG  NQFEMFQAQT  FDTNRINTEL  AWARGLGMSV  IRVFLQDQLW  TADPAGFTQR120
LDTFLSIASA  NGIRTMFVLF  DSCWDPNPKP  GVQREPTPGV  HNSTWVQSPG  AAGLTNADTS180
ALQAYATGVV  KAFANDPRVV  AWDVWNEPEN  LADSYPLSPP  DKVARVAQLL  PKAFEWARAG240
NPSQPLTSGV  WADTRPEIRT  IQLEQSDVIS  FHSYDPPEKF  RSMAADLAKE  GRPLLLTEYM300
ARAQGSTIET  ILPICKELKI  DAMQWGFVAG  RSQTYYPWDS  WKQPYVGARQ  PREWFHDILW360
PDGRPYRDSE  VATIRQLTAG  TTAPAPATQA  PAQPAPPQQQ  AAAPQAPQQP  PTAQ414

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help