CAZyme3D

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Entry ID

Information for CAZyme ID: ADE56317.1

Basic Information

GenBank IDADE56317.1
FamilyGT51
Sequence Length736
UniProt IDD5ECN5(100,100)Download
Average pLDDT?86.84
CAZy50 ID34293
CAZy50 RepYes, ADE56317.1
Structure ClusterSC_GT51_clus53
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID572547
KingdomBacteria
PhylumSynergistota
ClassSynergistia
OrderSynergistales
FamilyAminobacteriaceae
GenusAminobacterium
SpeciesAminobacterium colombiense

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEARSPLNKK  WRKGLVLGGA  LLFLLWVSPL  LIPLHIEKVR  EWPTSPILLD  EKLRPFFVSL60
SSSSEWCIPI  SYEQMGAWLP  HIAVAIEDRK  FWSHHGVDFF  AIARAGLQNI  RAKKVVSGAS120
TITSQVIRLS  ISRPRTIPMK  IAEFLQAMKL  ERLLSKKEIL  EIYLNRAPFG  SNIRGVEAAS180
RIWFGKPAAT  LNVEEAALLI  GMLRGPSLFR  PDRNPKRAMT  LRNQILAAIA  DQKLISKSFA240
AKRAGTPLPD  QTYSMPALAF  HFAHQVLSQS  EALVITTTLD  MQLQKRAEHV  IQRTLSGLPP300
SITGAAMVVH  NPTGAILAYV  GNGRLGTKQW  GSWIDCCQAL  RSPGSALKPF  VYLEAFRRGL360
LTPSSLLVDS  PLSFGGLAPR  NFDLTYRGPV  SARKALALSL  NVPAVRVLRT  VGTETLLQTL420
RAAGIASLTH  EPSHYGDSLI  LGGCETTVTQ  MALAYETLAN  LGIQRPLQMV  KENDAPYEKR480
IFDEASCFLI  ADILRDPGRL  LPVHQEGMAN  QNMSIAFKTG  TSYGLRDAWT  AAYTPEHTIV540
VWFGDPAGFP  HPLLTGLKIA  SSAAIEMIQA  ATKGKCKWYM  PPAALAQREV  CALSGLPPTK600
NCPAHRMDWY  IPGISRNDRC  SIHQKGKGQP  DIPLTQEPQK  LTITSPLPQS  QFFLTPEGRG660
QKIALRCEGS  KDILFWYLDN  EFFGQSKAPK  ELFWKLSPGR  HSISVMDEQG  RSDSISIEVL720
SLSSPKPQSA  PLLELH736

Predicted 3D structure by AlphaFold2 with pLDDT = 86.84 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MEARSPLNKK  WRKGLVLGGA  LLFLLWVSPL  LIPLHIEKVR  EWPTSPILLD  EKLRPFFVSL60
SSSSEWCIPI  SYEQMGAWLP  HIAVAIEDRK  FWSHHGVDFF  AIARAGLQNI  RAKKVVSGAS120
TITSQVIRLS  ISRPRTIPMK  IAEFLQAMKL  ERLLSKKEIL  EIYLNRAPFG  SNIRGVEAAS180
RIWFGKPAAT  LNVEEAALLI  GMLRGPSLFR  PDRNPKRAMT  LRNQILAAIA  DQKLISKSFA240
AKRAGTPLPD  QTYSMPALAF  HFAHQVLSQS  EALVITTTLD  MQLQKRAEHV  IQRTLSGLPP300
SITGAAMVVH  NPTGAILAYV  GNGRLGTKQW  GSWIDCCQAL  RSPGSALKPF  VYLEAFRRGL360
LTPSSLLVDS  PLSFGGLAPR  NFDLTYRGPV  SARKALALSL  NVPAVRVLRT  VGTETLLQTL420
RAAGIASLTH  EPSHYGDSLI  LGGCETTVTQ  MALAYETLAN  LGIQRPLQMV  KENDAPYEKR480
IFDEASCFLI  ADILRDPGRL  LPVHQEGMAN  QNMSIAFKTG  TSYGLRDAWT  AAYTPEHTIV540
VWFGDPAGFP  HPLLTGLKIA  SSAAIEMIQA  ATKGKCKWYM  PPAALAQREV  CALSGLPPTK600
NCPAHRMDWY  IPGISRNDRC  SIHQKGKGQP  DIPLTQEPQK  LTITSPLPQS  QFFLTPEGRG660
QKIALRCEGS  KDILFWYLDN  EFFGQSKAPK  ELFWKLSPGR  HSISVMDEQG  RSDSISIEVL720
SLSSPKPQSA  PLLELH736

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(65-228)

MEARSPLNKK  WRKGLVLGGA  LLFLLWVSPL  LIPLHIEKVR  EWPTSPILLD  EKLRPFFVSL60
SSSSEWCIPI  SYEQMGAWLP  HIAVAIEDRK  FWSHHGVDFF  AIARAGLQNI  RAKKVVSGAS120
TITSQVIRLS  ISRPRTIPMK  IAEFLQAMKL  ERLLSKKEIL  EIYLNRAPFG  SNIRGVEAAS180
RIWFGKPAAT  LNVEEAALLI  GMLRGPSLFR  PDRNPKRAMT  LRNQILAAIA  DQKLISKSFA240
AKRAGTPLPD  QTYSMPALAF  HFAHQVLSQS  EALVITTTLD  MQLQKRAEHV  IQRTLSGLPP300
SITGAAMVVH  NPTGAILAYV  GNGRLGTKQW  GSWIDCCQAL  RSPGSALKPF  VYLEAFRRGL360
LTPSSLLVDS  PLSFGGLAPR  NFDLTYRGPV  SARKALALSL  NVPAVRVLRT  VGTETLLQTL420
RAAGIASLTH  EPSHYGDSLI  LGGCETTVTQ  MALAYETLAN  LGIQRPLQMV  KENDAPYEKR480
IFDEASCFLI  ADILRDPGRL  LPVHQEGMAN  QNMSIAFKTG  TSYGLRDAWT  AAYTPEHTIV540
VWFGDPAGFP  HPLLTGLKIA  SSAAIEMIQA  ATKGKCKWYM  PPAALAQREV  CALSGLPPTK600
NCPAHRMDWY  IPGISRNDRC  SIHQKGKGQP  DIPLTQEPQK  LTITSPLPQS  QFFLTPEGRG660
QKIALRCEGS  KDILFWYLDN  EFFGQSKAPK  ELFWKLSPGR  HSISVMDEQG  RSDSISIEVL720
SLSSPKPQSA  PLLELH736

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help