CAZyme3D

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Entry ID

Information for CAZyme ID: ADC88771.1

Basic Information

GenBank IDADC88771.1
FamilyGT4
Sequence Length369
UniProt IDD3SNN4(100,100)Download
Average pLDDT?94.99
CAZy50 ID120185
CAZy50 RepYes, ADC88771.1
Structure ClusterSC_GT4_clus864
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID638303
KingdomBacteria
PhylumAquificota
ClassAquificae
OrderAquificales
FamilyAquificaceae
GenusThermocrinis
SpeciesThermocrinis albus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKVLHLGKLC  PPKEGGIEIF  SYDLLEYLNK  KGIRADLLCF  GDETAKKEYR  SFEYFESKMN60
IKLNSAPLSL  DFIKTFKQIE  KNYDITHVHS  PNPLAEILSL  FASKKVIIHW  HSDIVRQKIS120
YMFYKPIQQL  VLKKAERIIC  TSPQYLESSN  QIKGFKEKAV  VIPLGLNPDR  LKSDKEDKKW180
LEIRDKLKNK  KVVLSVGRLV  YYKGFEYLIE  SAKYLNDNTI  VLIVGAGPLY  EDLINLIKKL240
ALEEKVYLIG  KVENIQTFIK  KCDVFCLPSV  ERSEAFGLVL  VEALFYGKPL  VTTEVYGSGM300
SYVNKNNITG  LVVPPKNPKA  LADAINKILM  DKDLYQKFSK  NALERFKEFE  ISSVGDKILA360
LYEEVLIWS369

Predicted 3D structure by AlphaFold2 with pLDDT = 94.99 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKVLHLGKLC  PPKEGGIEIF  SYDLLEYLNK  KGIRADLLCF  GDETAKKEYR  SFEYFESKMN60
IKLNSAPLSL  DFIKTFKQIE  KNYDITHVHS  PNPLAEILSL  FASKKVIIHW  HSDIVRQKIS120
YMFYKPIQQL  VLKKAERIIC  TSPQYLESSN  QIKGFKEKAV  VIPLGLNPDR  LKSDKEDKKW180
LEIRDKLKNK  KVVLSVGRLV  YYKGFEYLIE  SAKYLNDNTI  VLIVGAGPLY  EDLINLIKKL240
ALEEKVYLIG  KVENIQTFIK  KCDVFCLPSV  ERSEAFGLVL  VEALFYGKPL  VTTEVYGSGM300
SYVNKNNITG  LVVPPKNPKA  LADAINKILM  DKDLYQKFSK  NALERFKEFE  ISSVGDKILA360
LYEEVLIWS369

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(187-339)

MKVLHLGKLC  PPKEGGIEIF  SYDLLEYLNK  KGIRADLLCF  GDETAKKEYR  SFEYFESKMN60
IKLNSAPLSL  DFIKTFKQIE  KNYDITHVHS  PNPLAEILSL  FASKKVIIHW  HSDIVRQKIS120
YMFYKPIQQL  VLKKAERIIC  TSPQYLESSN  QIKGFKEKAV  VIPLGLNPDR  LKSDKEDKKW180
LEIRDKLKNK  KVVLSVGRLV  YYKGFEYLIE  SAKYLNDNTI  VLIVGAGPLY  EDLINLIKKL240
ALEEKVYLIG  KVENIQTFIK  KCDVFCLPSV  ERSEAFGLVL  VEALFYGKPL  VTTEVYGSGM300
SYVNKNNITG  LVVPPKNPKA  LADAINKILM  DKDLYQKFSK  NALERFKEFE  ISSVGDKILA360
LYEEVLIWS369

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help