Information for CAZyme ID: ADA66512.1
Basic Information
GenBank ID | ADA66512.1 |
Family | GT4 |
Sequence Length | 388 |
UniProt ID | D2C6C6(100,100)![]() |
Average pLDDT? | 90.06 |
CAZy50 ID | 105882 |
CAZy50 Rep | Yes, ADA66512.1 |
Structure Cluster | SC_GT4_clus185 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 590168 |
Kingdom | Bacteria |
Phylum | Thermotogota |
Class | Thermotogae |
Order | Thermotogales |
Family | Thermotogaceae |
Genus | Thermotoga |
Species | Thermotoga petrophila |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MIKVLHIIPS LAVGGAEKLV SDMVEFADRS RFDVAVMRIT GTDSFLVEKL TSKGYQVYTI | 60 |
VLDYEAIAPS KVIRRLLRAI KNMRRTYNLL REIRPDIIHS HLSALRIALI PALLCRIPVK | 120 |
VHTIHTVAEK DAKGITRFFN RIAFKFFGFV PVSISQEVAE SVKKLYGRKI STPVIYNGID | 180 |
VQKFSIDQPK RVDRDKTILI NVARLSREKN HALLVRAFSK AVQSCPNLEL WLVGDGELRR | 240 |
DIEELVKQLG LEEKVKFFGV RSDVPELLSQ ADIFVLSSDY EGSGLVVAEA MAAGLPVIAT | 300 |
AIGGIPEILE GGRAGILVPP KDVDALAKAI VELARDEKKR AELSDYGRKL VAERFDIRRT | 360 |
VREYEKLYLE LLEKKKGSKK FRIKGNVL | 388 |
Predicted 3D structure by AlphaFold2 with pLDDT = 90.06 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MIKVLHIIPS LAVGGAEKLV SDMVEFADRS RFDVAVMRIT GTDSFLVEKL TSKGYQVYTI | 60 |
VLDYEAIAPS KVIRRLLRAI KNMRRTYNLL REIRPDIIHS HLSALRIALI PALLCRIPVK | 120 |
VHTIHTVAEK DAKGITRFFN RIAFKFFGFV PVSISQEVAE SVKKLYGRKI STPVIYNGID | 180 |
VQKFSIDQPK RVDRDKTILI NVARLSREKN HALLVRAFSK AVQSCPNLEL WLVGDGELRR | 240 |
DIEELVKQLG LEEKVKFFGV RSDVPELLSQ ADIFVLSSDY EGSGLVVAEA MAAGLPVIAT | 300 |
AIGGIPEILE GGRAGILVPP KDVDALAKAI VELARDEKKR AELSDYGRKL VAERFDIRRT | 360 |
VREYEKLYLE LLEKKKGSKK FRIKGNVL | 388 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.