CAZyme3D

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Entry ID

Information for CAZyme ID: ACZ18480.1

Basic Information

GenBank IDACZ18480.1
FamilyGH18
Sequence Length484
UniProt IDD1B877(100,100)Download
Average pLDDT?87.67
CAZy50 ID72326
CAZy50 RepYes, ACZ18480.1
Structure ClusterSC_GH18_clus404
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID525903
KingdomBacteria
PhylumSynergistota
ClassSynergistia
OrderSynergistales
FamilySynergistaceae
GenusThermanaerovibrio
SpeciesThermanaerovibrio acidaminovorans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIRALFMALA  GLVLPLILVP  GAVGSEGVPA  EQRAVEVPLY  VSTLGDRPVR  FGSAIQDGER60
LLFPLSVLRR  TGANVAFNQE  SKLVVMEVQR  SPLIDFPVPA  EGMRLTAPGR  SVNGDVYMDV120
AGFEPVLGIA  FQPLDDGVVL  MRASSRGELP  LRSPLGNQIQ  HPFSLVWDPL  YRTDPHQDPS180
FPPVSVVSPS  WFRIRPDGEV  EFKGRASYVE  GAHRLGAQVW  PLVNNGFDPS  ATKTFLNDPA240
AVNRAVARLA  AYAMLFGVDG  FNLDFENMDP  ADRDAYSAFV  QAVAERMRPL  GRKTSVDVTV300
ESTSAFWSRC  YDRRALGEAA  DYVMVMTYDE  HWGRSPVAGS  VASLPWVQRG  VEGLLRSVPA360
EKLLLGLPFY  TREWEETQTQ  SGVKVRSKAL  SMAAAEARVR  DNSASLTWLE  EAGQMYAEYR420
SGGKRYRIWL  EDERSLALKS  SLVPRYGLAG  VAAWRRGFER  PEVWAAIHNT  IGAAAARSRV480
STAQ484

Predicted 3D structure by AlphaFold2 with pLDDT = 87.67 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MIRALFMALA  GLVLPLILVP  GAVGSEGVPA  EQRAVEVPLY  VSTLGDRPVR  FGSAIQDGER60
LLFPLSVLRR  TGANVAFNQE  SKLVVMEVQR  SPLIDFPVPA  EGMRLTAPGR  SVNGDVYMDV120
AGFEPVLGIA  FQPLDDGVVL  MRASSRGELP  LRSPLGNQIQ  HPFSLVWDPL  YRTDPHQDPS180
FPPVSVVSPS  WFRIRPDGEV  EFKGRASYVE  GAHRLGAQVW  PLVNNGFDPS  ATKTFLNDPA240
AVNRAVARLA  AYAMLFGVDG  FNLDFENMDP  ADRDAYSAFV  QAVAERMRPL  GRKTSVDVTV300
ESTSAFWSRC  YDRRALGEAA  DYVMVMTYDE  HWGRSPVAGS  VASLPWVQRG  VEGLLRSVPA360
EKLLLGLPFY  TREWEETQTQ  SGVKVRSKAL  SMAAAEARVR  DNSASLTWLE  EAGQMYAEYR420
SGGKRYRIWL  EDERSLALKS  SLVPRYGLAG  VAAWRRGFER  PEVWAAIHNT  IGAAAARSRV480
STAQ484

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH18(233-460)

MIRALFMALA  GLVLPLILVP  GAVGSEGVPA  EQRAVEVPLY  VSTLGDRPVR  FGSAIQDGER60
LLFPLSVLRR  TGANVAFNQE  SKLVVMEVQR  SPLIDFPVPA  EGMRLTAPGR  SVNGDVYMDV120
AGFEPVLGIA  FQPLDDGVVL  MRASSRGELP  LRSPLGNQIQ  HPFSLVWDPL  YRTDPHQDPS180
FPPVSVVSPS  WFRIRPDGEV  EFKGRASYVE  GAHRLGAQVW  PLVNNGFDPS  ATKTFLNDPA240
AVNRAVARLA  AYAMLFGVDG  FNLDFENMDP  ADRDAYSAFV  QAVAERMRPL  GRKTSVDVTV300
ESTSAFWSRC  YDRRALGEAA  DYVMVMTYDE  HWGRSPVAGS  VASLPWVQRG  VEGLLRSVPA360
EKLLLGLPFY  TREWEETQTQ  SGVKVRSKAL  SMAAAEARVR  DNSASLTWLE  EAGQMYAEYR420
SGGKRYRIWL  EDERSLALKS  SLVPRYGLAG  VAAWRRGFER  PEVWAAIHNT  IGAAAARSRV480
STAQ484

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help