Information for CAZyme ID: ACX96334.1
Basic Information
| GenBank ID | ACX96334.1 |
| Family | GT2 |
| Sequence Length | 733 |
| UniProt ID | D0L0W1(100,100) |
| Average pLDDT? | 85.62 |
| CAZy50 ID | 34702 |
| CAZy50 Rep | Yes, ACX96334.1 |
| Structure Cluster | SC_GT2_clus700 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 555778 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Chromatiales |
| Family | Halothiobacillaceae |
| Genus | Halothiobacillus |
| Species | Halothiobacillus neapolitanus |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MISINASSNW HLECGQGVYR LKPRKPQKKG WFVLDISYTG NISPLVNPVV KLFLVTGEPA | 60 |
| QTLPLIIHAD RLRVIFLAPE PLTLLEVQQA DALQTAASLR FRLYRRAEFV ALASMMWAVS | 120 |
| RRDARKGISS IRVYAKSRAR YKKHGFSGYL TRLFKEYYLV DTHRLEEADI YQSYIAKTEH | 180 |
| RSQDSIQSTL TSLGYQPVIS VIMATWQSDL RWLDAAIQSV LQQSYPYWQL CIADDASEQK | 240 |
| KLIELLNHYK KKDSRIRVTF RYENGHISAA QNSGLLLATG AYVTFLDHDD LLAPNALLAV | 300 |
| AEALQQQPRP LFLYSDEDKI DGTGRRVNPH FKSDWNPDLL CAQNYITHLM VVERAMVESV | 360 |
| GGFRVGVEGS QDHDLALRVT EKLPPALIHH IPQVLYHWRI TENSTALHAD AKNYTSSAGV | 420 |
| AAIEEHFKRK NQDDVMVQPG LLPNTYRVLH PIPKPAPLVT LLIPTRDRLD MLKPCISSII | 480 |
| EKTSYKPYEI IILDNGSNEP QTHLFFAEIQ AQHEHIRVLS YDKPFNYSAI NNFGVAHAQG | 540 |
| TIIGLINNDI EVIQSGWLTE LVSHAVRPEI GCVGAKLYFD DGSIQHAGVI LGIGGVAGHA | 600 |
| HKYFARDAHG YFSRLQLVQN LSAVTGACLL VRKEVFEQVG GLEEDHLTVA FNDIDLCLKV | 660 |
| REAGYRNLWT PHAELYHHES KSRGRDDAPE KQARFQREVA WMIARWGAQL NSDPYYNPNL | 720 |
| TLQHEDFSIR LHE | 733 |
Predicted 3D structure by AlphaFold2 with pLDDT = 85.62 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MISINASSNW HLECGQGVYR LKPRKPQKKG WFVLDISYTG NISPLVNPVV KLFLVTGEPA | 60 |
| QTLPLIIHAD RLRVIFLAPE PLTLLEVQQA DALQTAASLR FRLYRRAEFV ALASMMWAVS | 120 |
| RRDARKGISS IRVYAKSRAR YKKHGFSGYL TRLFKEYYLV DTHRLEEADI YQSYIAKTEH | 180 |
| RSQDSIQSTL TSLGYQPVIS VIMATWQSDL RWLDAAIQSV LQQSYPYWQL CIADDASEQK | 240 |
| KLIELLNHYK KKDSRIRVTF RYENGHISAA QNSGLLLATG AYVTFLDHDD LLAPNALLAV | 300 |
| AEALQQQPRP LFLYSDEDKI DGTGRRVNPH FKSDWNPDLL CAQNYITHLM VVERAMVESV | 360 |
| GGFRVGVEGS QDHDLALRVT EKLPPALIHH IPQVLYHWRI TENSTALHAD AKNYTSSAGV | 420 |
| AAIEEHFKRK NQDDVMVQPG LLPNTYRVLH PIPKPAPLVT LLIPTRDRLD MLKPCISSII | 480 |
| EKTSYKPYEI IILDNGSNEP QTHLFFAEIQ AQHEHIRVLS YDKPFNYSAI NNFGVAHAQG | 540 |
| TIIGLINNDI EVIQSGWLTE LVSHAVRPEI GCVGAKLYFD DGSIQHAGVI LGIGGVAGHA | 600 |
| HKYFARDAHG YFSRLQLVQN LSAVTGACLL VRKEVFEQVG GLEEDHLTVA FNDIDLCLKV | 660 |
| REAGYRNLWT PHAELYHHES KSRGRDDAPE KQARFQREVA WMIARWGAQL NSDPYYNPNL | 720 |
| TLQHEDFSIR LHE | 733 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.