CAZyme3D

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Entry ID

Information for CAZyme ID: ACX96334.1

Basic Information

GenBank IDACX96334.1
FamilyGT2
Sequence Length733
UniProt IDD0L0W1(100,100)Download
Average pLDDT?85.62
CAZy50 ID34702
CAZy50 RepYes, ACX96334.1
Structure ClusterSC_GT2_clus700
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID555778
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilyHalothiobacillaceae
GenusHalothiobacillus
SpeciesHalothiobacillus neapolitanus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MISINASSNW  HLECGQGVYR  LKPRKPQKKG  WFVLDISYTG  NISPLVNPVV  KLFLVTGEPA60
QTLPLIIHAD  RLRVIFLAPE  PLTLLEVQQA  DALQTAASLR  FRLYRRAEFV  ALASMMWAVS120
RRDARKGISS  IRVYAKSRAR  YKKHGFSGYL  TRLFKEYYLV  DTHRLEEADI  YQSYIAKTEH180
RSQDSIQSTL  TSLGYQPVIS  VIMATWQSDL  RWLDAAIQSV  LQQSYPYWQL  CIADDASEQK240
KLIELLNHYK  KKDSRIRVTF  RYENGHISAA  QNSGLLLATG  AYVTFLDHDD  LLAPNALLAV300
AEALQQQPRP  LFLYSDEDKI  DGTGRRVNPH  FKSDWNPDLL  CAQNYITHLM  VVERAMVESV360
GGFRVGVEGS  QDHDLALRVT  EKLPPALIHH  IPQVLYHWRI  TENSTALHAD  AKNYTSSAGV420
AAIEEHFKRK  NQDDVMVQPG  LLPNTYRVLH  PIPKPAPLVT  LLIPTRDRLD  MLKPCISSII480
EKTSYKPYEI  IILDNGSNEP  QTHLFFAEIQ  AQHEHIRVLS  YDKPFNYSAI  NNFGVAHAQG540
TIIGLINNDI  EVIQSGWLTE  LVSHAVRPEI  GCVGAKLYFD  DGSIQHAGVI  LGIGGVAGHA600
HKYFARDAHG  YFSRLQLVQN  LSAVTGACLL  VRKEVFEQVG  GLEEDHLTVA  FNDIDLCLKV660
REAGYRNLWT  PHAELYHHES  KSRGRDDAPE  KQARFQREVA  WMIARWGAQL  NSDPYYNPNL720
TLQHEDFSIR  LHE733

Predicted 3D structure by AlphaFold2 with pLDDT = 85.62 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MISINASSNW  HLECGQGVYR  LKPRKPQKKG  WFVLDISYTG  NISPLVNPVV  KLFLVTGEPA60
QTLPLIIHAD  RLRVIFLAPE  PLTLLEVQQA  DALQTAASLR  FRLYRRAEFV  ALASMMWAVS120
RRDARKGISS  IRVYAKSRAR  YKKHGFSGYL  TRLFKEYYLV  DTHRLEEADI  YQSYIAKTEH180
RSQDSIQSTL  TSLGYQPVIS  VIMATWQSDL  RWLDAAIQSV  LQQSYPYWQL  CIADDASEQK240
KLIELLNHYK  KKDSRIRVTF  RYENGHISAA  QNSGLLLATG  AYVTFLDHDD  LLAPNALLAV300
AEALQQQPRP  LFLYSDEDKI  DGTGRRVNPH  FKSDWNPDLL  CAQNYITHLM  VVERAMVESV360
GGFRVGVEGS  QDHDLALRVT  EKLPPALIHH  IPQVLYHWRI  TENSTALHAD  AKNYTSSAGV420
AAIEEHFKRK  NQDDVMVQPG  LLPNTYRVLH  PIPKPAPLVT  LLIPTRDRLD  MLKPCISSII480
EKTSYKPYEI  IILDNGSNEP  QTHLFFAEIQ  AQHEHIRVLS  YDKPFNYSAI  NNFGVAHAQG540
TIIGLINNDI  EVIQSGWLTE  LVSHAVRPEI  GCVGAKLYFD  DGSIQHAGVI  LGIGGVAGHA600
HKYFARDAHG  YFSRLQLVQN  LSAVTGACLL  VRKEVFEQVG  GLEEDHLTVA  FNDIDLCLKV660
REAGYRNLWT  PHAELYHHES  KSRGRDDAPE  KQARFQREVA  WMIARWGAQL  NSDPYYNPNL720
TLQHEDFSIR  LHE733

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(200-328)+GT2(461-639)+GT2(584-703)

MISINASSNW  HLECGQGVYR  LKPRKPQKKG  WFVLDISYTG  NISPLVNPVV  KLFLVTGEPA60
QTLPLIIHAD  RLRVIFLAPE  PLTLLEVQQA  DALQTAASLR  FRLYRRAEFV  ALASMMWAVS120
RRDARKGISS  IRVYAKSRAR  YKKHGFSGYL  TRLFKEYYLV  DTHRLEEADI  YQSYIAKTEH180
RSQDSIQSTL  TSLGYQPVIS  VIMATWQSDL  RWLDAAIQSV  LQQSYPYWQL  CIADDASEQK240
KLIELLNHYK  KKDSRIRVTF  RYENGHISAA  QNSGLLLATG  AYVTFLDHDD  LLAPNALLAV300
AEALQQQPRP  LFLYSDEDKI  DGTGRRVNPH  FKSDWNPDLL  CAQNYITHLM  VVERAMVESV360
GGFRVGVEGS  QDHDLALRVT  EKLPPALIHH  IPQVLYHWRI  TENSTALHAD  AKNYTSSAGV420
AAIEEHFKRK  NQDDVMVQPG  LLPNTYRVLH  PIPKPAPLVT  LLIPTRDRLD  MLKPCISSII480
EKTSYKPYEI  IILDNGSNEP  QTHLFFAEIQ  AQHEHIRVLS  YDKPFNYSAI  NNFGVAHAQG540
TIIGLINNDI  EVIQSGWLTE  LVSHAVRPEI  GCVGAKLYFD  DGSIQHAGVI  LGIGGVAGHA600
HKYFARDAHG  YFSRLQLVQN  LSAVTGACLL  VRKEVFEQVG  GLEEDHLTVA  FNDIDLCLKV660
REAGYRNLWT  PHAELYHHES  KSRGRDDAPE  KQARFQREVA  WMIARWGAQL  NSDPYYNPNL720
TLQHEDFSIR  LHE733

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help