CAZyme3D

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Entry ID

Information for CAZyme ID: ACU74799.1

Basic Information

GenBank IDACU74799.1
FamilyCBM13, GH92
Sequence Length890
UniProt IDC7QF41(100,100)Download
Average pLDDT?91.31
CAZy50 ID20048
CAZy50 RepYes, ACU74799.1
Structure ClusterSC_CBM13_clus11, SC_GH92_clus36
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID479433
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderCatenulisporales
FamilyCatenulisporaceae
GenusCatenulispora
SpeciesCatenulispora acidiphila

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTGSNRTGRP  RRLSSLISAG  ALVAATALGT  AGLSAGAAHA  AAPAFVADPA  STVNTLVMTS60
GGGNDFPGAD  SPFGMVQWSP  DSPNGSRNAG  GGYDYSANST  RGFSLTHVAG  PGCGAMGDLP120
VLPFTGGLPS  GDPGVLTESL  NHSTETGNAG  YYTVSTGSTP  VKTELTTTAH  TGIARFTFPA180
TTQADLLLKL  LDSQNGSSAT  AAQIVGSNEV  TGQLTSGGFC  GEAGSYTLHF  DMVFSQNFTS240
SQVITESGQG  SPNSVFLNFN  TSSNQTVQAK  VGISYVSAAN  ASANLAAEQS  GFNFSTVQTA300
AHNAWNAQLN  KIQIAGGTTS  QQQLFYTSLY  HALLHPNTVT  DVNNQYMGFD  NAVHTAASGH360
PQYDQFSGWD  VYKGQTQLAA  FVDPSIASDQ  AQSLVNDYAQ  GGTFPQWGFM  NFYNWVMDGD420
PATAAIANYY  AFGGTNFNTS  TALSDMLNEA  TTNNNVRRGT  SLENTYGYLP  SDLYTGSLGC480
CNVRDTASSL  IEYDNADFAL  SRFASSMGDS  ANATKFNARA  NNWKHIFNPA  NQLLNPESSN540
GSFDSITTGS  TTGFTESTAA  QNRFDVGFDQ  AGLAALYGGN  SAINSALDYY  FQSFNSSHSD600
QSFLSNEVDL  GTPWFYDWTG  EPSHTQSVVN  RMLNQLYQDT  PAGFPNNDDL  GTMSSQYVWG660
ALGMYPVTPG  SADLALNSPL  FTQAVVHLDS  GSTITINAPA  ASASNYYIQS  LTVNGTASTH720
TWLPASTWKS  GATLNFTLGS  SASSWGTAAG  DAPPSYDQSS  AGGAVGPLTS  GIAGKCADDD780
HRGTANGTKI  QLWSCNGSVA  QQFTANANGS  LGIMGGCLDV  TSGGSADGTL  VQLYTCNNTG840
SQVWQQQSNG  SLVNPQSGKC  LDDPGSSTTD  GTQLQIYTCN  GSNAQKWTIP  890

Predicted 3D structure by AlphaFold2 with pLDDT = 91.31 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTGSNRTGRP  RRLSSLISAG  ALVAATALGT  AGLSAGAAHA  AAPAFVADPA  STVNTLVMTS60
GGGNDFPGAD  SPFGMVQWSP  DSPNGSRNAG  GGYDYSANST  RGFSLTHVAG  PGCGAMGDLP120
VLPFTGGLPS  GDPGVLTESL  NHSTETGNAG  YYTVSTGSTP  VKTELTTTAH  TGIARFTFPA180
TTQADLLLKL  LDSQNGSSAT  AAQIVGSNEV  TGQLTSGGFC  GEAGSYTLHF  DMVFSQNFTS240
SQVITESGQG  SPNSVFLNFN  TSSNQTVQAK  VGISYVSAAN  ASANLAAEQS  GFNFSTVQTA300
AHNAWNAQLN  KIQIAGGTTS  QQQLFYTSLY  HALLHPNTVT  DVNNQYMGFD  NAVHTAASGH360
PQYDQFSGWD  VYKGQTQLAA  FVDPSIASDQ  AQSLVNDYAQ  GGTFPQWGFM  NFYNWVMDGD420
PATAAIANYY  AFGGTNFNTS  TALSDMLNEA  TTNNNVRRGT  SLENTYGYLP  SDLYTGSLGC480
CNVRDTASSL  IEYDNADFAL  SRFASSMGDS  ANATKFNARA  NNWKHIFNPA  NQLLNPESSN540
GSFDSITTGS  TTGFTESTAA  QNRFDVGFDQ  AGLAALYGGN  SAINSALDYY  FQSFNSSHSD600
QSFLSNEVDL  GTPWFYDWTG  EPSHTQSVVN  RMLNQLYQDT  PAGFPNNDDL  GTMSSQYVWG660
ALGMYPVTPG  SADLALNSPL  FTQAVVHLDS  GSTITINAPA  ASASNYYIQS  LTVNGTASTH720
TWLPASTWKS  GATLNFTLGS  SASSWGTAAG  DAPPSYDQSS  AGGAVGPLTS  GIAGKCADDD780
HRGTANGTKI  QLWSCNGSVA  QQFTANANGS  LGIMGGCLDV  TSGGSADGTL  VQLYTCNNTG840
SQVWQQQSNG  SLVNPQSGKC  LDDPGSSTTD  GTQLQIYTCN  GSNAQKWTIP  890

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH92(255-740)+CBM13(769-889)

MTGSNRTGRP  RRLSSLISAG  ALVAATALGT  AGLSAGAAHA  AAPAFVADPA  STVNTLVMTS60
GGGNDFPGAD  SPFGMVQWSP  DSPNGSRNAG  GGYDYSANST  RGFSLTHVAG  PGCGAMGDLP120
VLPFTGGLPS  GDPGVLTESL  NHSTETGNAG  YYTVSTGSTP  VKTELTTTAH  TGIARFTFPA180
TTQADLLLKL  LDSQNGSSAT  AAQIVGSNEV  TGQLTSGGFC  GEAGSYTLHF  DMVFSQNFTS240
SQVITESGQG  SPNSVFLNFN  TSSNQTVQAK  VGISYVSAAN  ASANLAAEQS  GFNFSTVQTA300
AHNAWNAQLN  KIQIAGGTTS  QQQLFYTSLY  HALLHPNTVT  DVNNQYMGFD  NAVHTAASGH360
PQYDQFSGWD  VYKGQTQLAA  FVDPSIASDQ  AQSLVNDYAQ  GGTFPQWGFM  NFYNWVMDGD420
PATAAIANYY  AFGGTNFNTS  TALSDMLNEA  TTNNNVRRGT  SLENTYGYLP  SDLYTGSLGC480
CNVRDTASSL  IEYDNADFAL  SRFASSMGDS  ANATKFNARA  NNWKHIFNPA  NQLLNPESSN540
GSFDSITTGS  TTGFTESTAA  QNRFDVGFDQ  AGLAALYGGN  SAINSALDYY  FQSFNSSHSD600
QSFLSNEVDL  GTPWFYDWTG  EPSHTQSVVN  RMLNQLYQDT  PAGFPNNDDL  GTMSSQYVWG660
ALGMYPVTPG  SADLALNSPL  FTQAVVHLDS  GSTITINAPA  ASASNYYIQS  LTVNGTASTH720
TWLPASTWKS  GATLNFTLGS  SASSWGTAAG  DAPPSYDQSS  AGGAVGPLTS  GIAGKCADDD780
HRGTANGTKI  QLWSCNGSVA  QQFTANANGS  LGIMGGCLDV  TSGGSADGTL  VQLYTCNNTG840
SQVWQQQSNG  SLVNPQSGKC  LDDPGSSTTD  GTQLQIYTCN  GSNAQKWTIP  890

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help