CAZyme3D

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Entry ID

Information for CAZyme ID: ACR41819.1

Basic Information

GenBank IDACR41819.1
FamilyGH15
Sequence Length622
UniProt IDC4KGV5(100,100)Download
Average pLDDT?95.44
CAZy50 ID49233
CAZy50 RepYes, ACR41819.1
Structure ClusterSC_GH15_clus58
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID426118
KingdomArchaea
PhylumThermoproteota
ClassThermoprotei
OrderSulfolobales
FamilySulfolobaceae
GenusSulfolobus
SpeciesSulfolobus islandicus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRVSSIGNGR  MLINFDEKGR  IVDIYYPYIG  MENQTSGNPI  RLAIWDKDKN  VISLDEEWET60
TVLYLDEANM  VEIRSDIRKL  GLSLLSYNFL  DPDDPIYMSI  IKVANNENNN  RNIKIFFIHD120
INLYSNPFGD  TAFYDPLSLS  IVHYKSKRYL  AFKVFTTTSI  FSEYNVGKGD  LIGDIYDGNL180
GLNGIENGDV  NSSMGIEANI  DPNSYVKLYN  VIVADRNLED  LRQKIRKINF  ANVETSFTLT240
YMFWRNWLKK  NKLFRNSLMQ  DIKRVYDVSL  FVIRNHMDIN  GSIIASSDFS  FVKIYGDSYQ300
YCWPRDAAIA  AYALDLAGYK  ELALRHFQFI  SNIVNSEGFL  YHKYNPNTTL  ASSWHPWFYK360
GKRIYPIQED  ETALEVWAIV  SHYEKYEDID  EILPLYKKFV  KPALKFMMSF  MEEGLPKPSF420
DLWEERYGIH  IYTVSTVYGA  LTKGAKLAYD  VGDEILSEDL  SDTSGLLKGM  VLKRMTYNGR480
FIRRIDEENN  QDLTVDSSLY  APFFFGLVDA  NDKIMINTIN  EIENKLTVNG  GVIRYENDMY540
QRRRKQPNPW  IITTLWLAEY  YATINDKNKA  NEYIKWVINR  ALPTGFLPEQ  VDPETFEPTS600
VTPLVWSHAE  FIIAINKLLN  HI622

Predicted 3D structure by AlphaFold2 with pLDDT = 95.44 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRVSSIGNGR  MLINFDEKGR  IVDIYYPYIG  MENQTSGNPI  RLAIWDKDKN  VISLDEEWET60
TVLYLDEANM  VEIRSDIRKL  GLSLLSYNFL  DPDDPIYMSI  IKVANNENNN  RNIKIFFIHD120
INLYSNPFGD  TAFYDPLSLS  IVHYKSKRYL  AFKVFTTTSI  FSEYNVGKGD  LIGDIYDGNL180
GLNGIENGDV  NSSMGIEANI  DPNSYVKLYN  VIVADRNLED  LRQKIRKINF  ANVETSFTLT240
YMFWRNWLKK  NKLFRNSLMQ  DIKRVYDVSL  FVIRNHMDIN  GSIIASSDFS  FVKIYGDSYQ300
YCWPRDAAIA  AYALDLAGYK  ELALRHFQFI  SNIVNSEGFL  YHKYNPNTTL  ASSWHPWFYK360
GKRIYPIQED  ETALEVWAIV  SHYEKYEDID  EILPLYKKFV  KPALKFMMSF  MEEGLPKPSF420
DLWEERYGIH  IYTVSTVYGA  LTKGAKLAYD  VGDEILSEDL  SDTSGLLKGM  VLKRMTYNGR480
FIRRIDEENN  QDLTVDSSLY  APFFFGLVDA  NDKIMINTIN  EIENKLTVNG  GVIRYENDMY540
QRRRKQPNPW  IITTLWLAEY  YATINDKNKA  NEYIKWVINR  ALPTGFLPEQ  VDPETFEPTS600
VTPLVWSHAE  FIIAINKLLN  HI622

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH15(276-614)

MRVSSIGNGR  MLINFDEKGR  IVDIYYPYIG  MENQTSGNPI  RLAIWDKDKN  VISLDEEWET60
TVLYLDEANM  VEIRSDIRKL  GLSLLSYNFL  DPDDPIYMSI  IKVANNENNN  RNIKIFFIHD120
INLYSNPFGD  TAFYDPLSLS  IVHYKSKRYL  AFKVFTTTSI  FSEYNVGKGD  LIGDIYDGNL180
GLNGIENGDV  NSSMGIEANI  DPNSYVKLYN  VIVADRNLED  LRQKIRKINF  ANVETSFTLT240
YMFWRNWLKK  NKLFRNSLMQ  DIKRVYDVSL  FVIRNHMDIN  GSIIASSDFS  FVKIYGDSYQ300
YCWPRDAAIA  AYALDLAGYK  ELALRHFQFI  SNIVNSEGFL  YHKYNPNTTL  ASSWHPWFYK360
GKRIYPIQED  ETALEVWAIV  SHYEKYEDID  EILPLYKKFV  KPALKFMMSF  MEEGLPKPSF420
DLWEERYGIH  IYTVSTVYGA  LTKGAKLAYD  VGDEILSEDL  SDTSGLLKGM  VLKRMTYNGR480
FIRRIDEENN  QDLTVDSSLY  APFFFGLVDA  NDKIMINTIN  EIENKLTVNG  GVIRYENDMY540
QRRRKQPNPW  IITTLWLAEY  YATINDKNKA  NEYIKWVINR  ALPTGFLPEQ  VDPETFEPTS600
VTPLVWSHAE  FIIAINKLLN  HI622

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help