CAZyme3D

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Entry ID

Information for CAZyme ID: ACQ81111.1

Basic Information

GenBank IDACQ81111.1
FamilyGH163
Sequence Length801
UniProt IDC5BYZ6(100,100)Download
Average pLDDT?87.97
CAZy50 ID27228
CAZy50 RepYes, ACQ81111.1
Structure ClusterSC_GH163_clus14
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID471853
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyBeutenbergiaceae
GenusBeutenbergia
SpeciesBeutenbergia cavernae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTEQPTDRVA  QGLTARGGPA  DVPQARGTTR  RTVLGAGVVG  VAGTLATATA  AGAETHGAGG60
GRLVLASGGR  TDYVVQVAAD  ETPVVRHAAQ  ELADYLHEIT  GARFDLVSAP  PRGRGRKVLL120
VGRAETLDSE  HGVDAGAVGV  DPAALGDDGF  ALRTFSARRG  SRDDVLIAGG  TERGTLYGVS180
WFLDRLCGVR  WFAPTYTAVP  DERRLSLRRR  DVDGDHVPRF  RFREVFASDG  FDPVCRQHNL240
LNGRSLEARE  VPAPPEVDTW  SGYWPWETHN  FHQIVPDQQL  WSGGQLLAME  PRTREAAATE300
LVRRIDAKLA  EGGPAAHGFG  QMDWGWTPDA  ESRAFADAHG  GALSAPVIDM  VNEVAERVRQ360
EIPGARIGTL  AYLFSLVPPT  DLSVDDGVVV  TMAPLQADFG  RPLIDDGNAE  FSAAIQGWSD420
LTGEIVVWTY  NTNFHDYLMP  FPNYRPMFTS  VAQLAERGIQ  GYFGQAAWDM  GGGAELADLR480
MWVLARLLWD  PEQDAAALVR  EFADGFYGAG  GRHVAEYMDL  LSDAFERTQM  RLPCYVDTVV540
VPYLDVETAH  RADQLLAAAE  RAVRRDHERL  AHVREARIGM  DLVVLKQRRI  FARDAERLGI600
SWDLDVERRL  RRVLRALSDA  GTTAFREILG  GPAIGDMGWL  RTLVSVMPRE  APVPEEAAGL660
PESDWADFSV  LELDLYPPVT  SVLADDAASD  GYLARMPGDV  PDWGFQLNLG  QLPDDGPWRL720
HAVVRADTGD  AADDAVAMRM  GVYPGTPTID  LTVEQVGGEE  FRTVEIPGTY  GRSFDVAFWM780
SPPDSDSVAH  VDIDRVVAVR  A801

Predicted 3D structure by AlphaFold2 with pLDDT = 87.97 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTEQPTDRVA  QGLTARGGPA  DVPQARGTTR  RTVLGAGVVG  VAGTLATATA  AGAETHGAGG60
GRLVLASGGR  TDYVVQVAAD  ETPVVRHAAQ  ELADYLHEIT  GARFDLVSAP  PRGRGRKVLL120
VGRAETLDSE  HGVDAGAVGV  DPAALGDDGF  ALRTFSARRG  SRDDVLIAGG  TERGTLYGVS180
WFLDRLCGVR  WFAPTYTAVP  DERRLSLRRR  DVDGDHVPRF  RFREVFASDG  FDPVCRQHNL240
LNGRSLEARE  VPAPPEVDTW  SGYWPWETHN  FHQIVPDQQL  WSGGQLLAME  PRTREAAATE300
LVRRIDAKLA  EGGPAAHGFG  QMDWGWTPDA  ESRAFADAHG  GALSAPVIDM  VNEVAERVRQ360
EIPGARIGTL  AYLFSLVPPT  DLSVDDGVVV  TMAPLQADFG  RPLIDDGNAE  FSAAIQGWSD420
LTGEIVVWTY  NTNFHDYLMP  FPNYRPMFTS  VAQLAERGIQ  GYFGQAAWDM  GGGAELADLR480
MWVLARLLWD  PEQDAAALVR  EFADGFYGAG  GRHVAEYMDL  LSDAFERTQM  RLPCYVDTVV540
VPYLDVETAH  RADQLLAAAE  RAVRRDHERL  AHVREARIGM  DLVVLKQRRI  FARDAERLGI600
SWDLDVERRL  RRVLRALSDA  GTTAFREILG  GPAIGDMGWL  RTLVSVMPRE  APVPEEAAGL660
PESDWADFSV  LELDLYPPVT  SVLADDAASD  GYLARMPGDV  PDWGFQLNLG  QLPDDGPWRL720
HAVVRADTGD  AADDAVAMRM  GVYPGTPTID  LTVEQVGGEE  FRTVEIPGTY  GRSFDVAFWM780
SPPDSDSVAH  VDIDRVVAVR  A801

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH163(284-518)

MTEQPTDRVA  QGLTARGGPA  DVPQARGTTR  RTVLGAGVVG  VAGTLATATA  AGAETHGAGG60
GRLVLASGGR  TDYVVQVAAD  ETPVVRHAAQ  ELADYLHEIT  GARFDLVSAP  PRGRGRKVLL120
VGRAETLDSE  HGVDAGAVGV  DPAALGDDGF  ALRTFSARRG  SRDDVLIAGG  TERGTLYGVS180
WFLDRLCGVR  WFAPTYTAVP  DERRLSLRRR  DVDGDHVPRF  RFREVFASDG  FDPVCRQHNL240
LNGRSLEARE  VPAPPEVDTW  SGYWPWETHN  FHQIVPDQQL  WSGGQLLAME  PRTREAAATE300
LVRRIDAKLA  EGGPAAHGFG  QMDWGWTPDA  ESRAFADAHG  GALSAPVIDM  VNEVAERVRQ360
EIPGARIGTL  AYLFSLVPPT  DLSVDDGVVV  TMAPLQADFG  RPLIDDGNAE  FSAAIQGWSD420
LTGEIVVWTY  NTNFHDYLMP  FPNYRPMFTS  VAQLAERGIQ  GYFGQAAWDM  GGGAELADLR480
MWVLARLLWD  PEQDAAALVR  EFADGFYGAG  GRHVAEYMDL  LSDAFERTQM  RLPCYVDTVV540
VPYLDVETAH  RADQLLAAAE  RAVRRDHERL  AHVREARIGM  DLVVLKQRRI  FARDAERLGI600
SWDLDVERRL  RRVLRALSDA  GTTAFREILG  GPAIGDMGWL  RTLVSVMPRE  APVPEEAAGL660
PESDWADFSV  LELDLYPPVT  SVLADDAASD  GYLARMPGDV  PDWGFQLNLG  QLPDDGPWRL720
HAVVRADTGD  AADDAVAMRM  GVYPGTPTID  LTVEQVGGEE  FRTVEIPGTY  GRSFDVAFWM780
SPPDSDSVAH  VDIDRVVAVR  A801

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help