CAZyme3D

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Entry ID

Information for CAZyme ID: ACO67993.1

Basic Information

GenBank IDACO67993.1
FamilyGT77
Sequence Length746
UniProt IDC1EJ83(100,100)Download
Average pLDDT?75.17
CAZy50 ID33164
CAZy50 RepYes, ACO67993.1
Structure ClusterSC_GT77_clus50
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID296587
KingdomEukaryota
PhylumChlorophyta
ClassMamiellophyceae
OrderMamiellales
FamilyMamiellaceae
GenusMicromonas
SpeciesMicromonas commoda

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRLGLFLRLL  YASASLRFNP  SSQRASNAHT  PRIQCLDRVQ  VAWCSHSVGG  EAVRAYPFCT60
MRCTVRRLIV  YTVLITLISY  TGFRLTQPVS  IPISNPAANV  GIVRSAGVQA  GGETREPRMG120
ASEPKIDVAS  VTPIVPTETR  VDDLEEQPTS  SPPPPQPAQP  RAPPPPPTPL  LGADDQVVVK180
AEGNATVETE  VNATRIHVGK  PGEYVAPKSK  LAEDNQLTAE  LVGRYAEDNI  VMVTWANHHY240
HDFVRNWVRN  VRKCGMRNYM  VGAMDNELLE  KLIDDEVPTF  AMQSGLTTKD  FGWGTANFHK300
MGRKKIELIH  LFTEMGFDIL  VSDVDTVWLR  NPLPYMAKYP  HADVLTSSDH  LANTAEGEGL360
EDPRKAHSAA  NIGIMLLRDT  AKELAKEWVD  VLEKDDKVWD  QNVFNDLYRR  GGGPSVKDDK420
NVVTGYDGKL  KVGILPVSMF  ASGHTYFVQR  MHEKVGVEPY  VVHATFQYSG  TEGKRHRMRE480
ALLWEDSPEY  YDPPGGLLVF  TPDVPKELLD  NSQSVEGHFD  LVNHQILQVR  SALQVAQKLG540
RVLVMPELYC  GFDRWWAPHK  GTIPGSDTTL  PYLCPMDHVF  EVETWMREQP  VEESGPHIDF600
REYSFFRNPL  VPTNVRDSTV  TVSLVDECGR  EECTQAVGKA  APAGQDTIVA  ARNFTDVQVQ660
TLLTEYKDVK  VLNFTSMVGA  FSQFEDPEDA  KKFSNRIKKY  AAIWCCKHRN  PGHIWYDMEF720
DIVPHVDRHN  RKWDGGKNKW  KLVTGP746

Predicted 3D structure by AlphaFold2 with pLDDT = 75.17 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRLGLFLRLL  YASASLRFNP  SSQRASNAHT  PRIQCLDRVQ  VAWCSHSVGG  EAVRAYPFCT60
MRCTVRRLIV  YTVLITLISY  TGFRLTQPVS  IPISNPAANV  GIVRSAGVQA  GGETREPRMG120
ASEPKIDVAS  VTPIVPTETR  VDDLEEQPTS  SPPPPQPAQP  RAPPPPPTPL  LGADDQVVVK180
AEGNATVETE  VNATRIHVGK  PGEYVAPKSK  LAEDNQLTAE  LVGRYAEDNI  VMVTWANHHY240
HDFVRNWVRN  VRKCGMRNYM  VGAMDNELLE  KLIDDEVPTF  AMQSGLTTKD  FGWGTANFHK300
MGRKKIELIH  LFTEMGFDIL  VSDVDTVWLR  NPLPYMAKYP  HADVLTSSDH  LANTAEGEGL360
EDPRKAHSAA  NIGIMLLRDT  AKELAKEWVD  VLEKDDKVWD  QNVFNDLYRR  GGGPSVKDDK420
NVVTGYDGKL  KVGILPVSMF  ASGHTYFVQR  MHEKVGVEPY  VVHATFQYSG  TEGKRHRMRE480
ALLWEDSPEY  YDPPGGLLVF  TPDVPKELLD  NSQSVEGHFD  LVNHQILQVR  SALQVAQKLG540
RVLVMPELYC  GFDRWWAPHK  GTIPGSDTTL  PYLCPMDHVF  EVETWMREQP  VEESGPHIDF600
REYSFFRNPL  VPTNVRDSTV  TVSLVDECGR  EECTQAVGKA  APAGQDTIVA  ARNFTDVQVQ660
TLLTEYKDVK  VLNFTSMVGA  FSQFEDPEDA  KKFSNRIKKY  AAIWCCKHRN  PGHIWYDMEF720
DIVPHVDRHN  RKWDGGKNKW  KLVTGP746

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT77(256-478)

MRLGLFLRLL  YASASLRFNP  SSQRASNAHT  PRIQCLDRVQ  VAWCSHSVGG  EAVRAYPFCT60
MRCTVRRLIV  YTVLITLISY  TGFRLTQPVS  IPISNPAANV  GIVRSAGVQA  GGETREPRMG120
ASEPKIDVAS  VTPIVPTETR  VDDLEEQPTS  SPPPPQPAQP  RAPPPPPTPL  LGADDQVVVK180
AEGNATVETE  VNATRIHVGK  PGEYVAPKSK  LAEDNQLTAE  LVGRYAEDNI  VMVTWANHHY240
HDFVRNWVRN  VRKCGMRNYM  VGAMDNELLE  KLIDDEVPTF  AMQSGLTTKD  FGWGTANFHK300
MGRKKIELIH  LFTEMGFDIL  VSDVDTVWLR  NPLPYMAKYP  HADVLTSSDH  LANTAEGEGL360
EDPRKAHSAA  NIGIMLLRDT  AKELAKEWVD  VLEKDDKVWD  QNVFNDLYRR  GGGPSVKDDK420
NVVTGYDGKL  KVGILPVSMF  ASGHTYFVQR  MHEKVGVEPY  VVHATFQYSG  TEGKRHRMRE480
ALLWEDSPEY  YDPPGGLLVF  TPDVPKELLD  NSQSVEGHFD  LVNHQILQVR  SALQVAQKLG540
RVLVMPELYC  GFDRWWAPHK  GTIPGSDTTL  PYLCPMDHVF  EVETWMREQP  VEESGPHIDF600
REYSFFRNPL  VPTNVRDSTV  TVSLVDECGR  EECTQAVGKA  APAGQDTIVA  ARNFTDVQVQ660
TLLTEYKDVK  VLNFTSMVGA  FSQFEDPEDA  KKFSNRIKKY  AAIWCCKHRN  PGHIWYDMEF720
DIVPHVDRHN  RKWDGGKNKW  KLVTGP746

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help