CAZyme3D

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Entry ID

Information for CAZyme ID: ACO04079.1

Basic Information

GenBank IDACO04079.1
FamilyGT9
Sequence Length332
UniProt IDC0QT27(100,100)Download
Average pLDDT?96.78
CAZy50 ID140871
CAZy50 RepYes, ACO04079.1
Structure ClusterSC_GT9_clus18
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID123214
KingdomBacteria
PhylumAquificota
ClassAquificae
OrderAquificales
FamilyHydrogenothermaceae
GenusPersephonella
SpeciesPersephonella marina

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKIVVWQTAF  LGDLILTTPL  IKSLKNLYPE  SQIHLISKPF  GKDVFKGNPY  LDELIVFDKK60
RDSTISLIKR  LRREGYDIAI  SPHRSHRASY  VLFLSGIKKR  IGFDRAGFSF  LYTDKVPHRF120
DGTHEIKRNL  SLLKKLESYD  KGKIDSLPEL  FLSEEEDRFF  ESFGLEDKKY  ITIAPGSKWE180
TKRWTEEGFS  ELIDELVKMG  ESVVIIGGKE  DVQVSKRIVD  RLSHKSNVID  LTGSTSLRES240
FSVVKHSKLL  ISNDSAPVHI  AVSFNTPVVD  IYGPTVREFG  FYPYRNGVVV  EAEGVVCRPC300
GLHGHRKCPT  GTFECMKKIT  PQKVLKAVKR  FL332

Predicted 3D structure by AlphaFold2 with pLDDT = 96.78 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKIVVWQTAF  LGDLILTTPL  IKSLKNLYPE  SQIHLISKPF  GKDVFKGNPY  LDELIVFDKK60
RDSTISLIKR  LRREGYDIAI  SPHRSHRASY  VLFLSGIKKR  IGFDRAGFSF  LYTDKVPHRF120
DGTHEIKRNL  SLLKKLESYD  KGKIDSLPEL  FLSEEEDRFF  ESFGLEDKKY  ITIAPGSKWE180
TKRWTEEGFS  ELIDELVKMG  ESVVIIGGKE  DVQVSKRIVD  RLSHKSNVID  LTGSTSLRES240
FSVVKHSKLL  ISNDSAPVHI  AVSFNTPVVD  IYGPTVREFG  FYPYRNGVVV  EAEGVVCRPC300
GLHGHRKCPT  GTFECMKKIT  PQKVLKAVKR  FL332

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT9(66-312)

MKIVVWQTAF  LGDLILTTPL  IKSLKNLYPE  SQIHLISKPF  GKDVFKGNPY  LDELIVFDKK60
RDSTISLIKR  LRREGYDIAI  SPHRSHRASY  VLFLSGIKKR  IGFDRAGFSF  LYTDKVPHRF120
DGTHEIKRNL  SLLKKLESYD  KGKIDSLPEL  FLSEEEDRFF  ESFGLEDKKY  ITIAPGSKWE180
TKRWTEEGFS  ELIDELVKMG  ESVVIIGGKE  DVQVSKRIVD  RLSHKSNVID  LTGSTSLRES240
FSVVKHSKLL  ISNDSAPVHI  AVSFNTPVVD  IYGPTVREFG  FYPYRNGVVV  EAEGVVCRPC300
GLHGHRKCPT  GTFECMKKIT  PQKVLKAVKR  FL332

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help