CAZyme3D

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Entry ID

Information for CAZyme ID: ACN11245.1

Basic Information

GenBank IDACN11245.1
FamilyGT31
Sequence Length598
UniProt IDC0HB26(100,100)Download
Average pLDDT?85.57
CAZy50 ID52591
CAZy50 RepYes, ACN11245.1
Structure ClusterSC_GT31_clus139
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID8030
KingdomEukaryota
PhylumChordata
ClassActinopteri
OrderSalmoniformes
FamilySalmonidae
GenusSalmo
SpeciesSalmo salar

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQAFAVAALS  IWLCLGATAL  AESHGPQPCT  SPNMTGVLTV  LALTGGEIKA  TGHYSYDSTD60
KKIRFTESEM  HLNKTEHLED  YLMLFEEGVF  YDIDMKNQSC  KKMSLHSHAH  ALDLPTGAAH120
QVELFLGSDT  VQEENIKVNI  WTGSVPETKD  LREIVFVIQS  QRNSFHVSRA  ERQRADLLHQ180
TQSLTQTPPP  VLLLHSLTDN  EGDWSILPVL  PYLSLLFGKN  SSWLVFLEEE  TNVKVTKLLQ240
ALRKFDRRKE  WFLGKPLHDE  EPTIIHHYAF  AENPSIFKYP  DFSAAWALSI  PLLDRLANKV300
RDDPLKSDFT  IDLKHEVALY  IWENGQGPRL  TAIPELCTEP  EHSPTAQHCA  TTLSSPAPLC360
GEPVKKEDIF  VAVKTCKKFH  TERVPVVKKT  WEREAFLLEY  YSDHTDPSIP  TIDLGVPNTE420
RGHCGKTFAI  LKRYVSDAVP  KTRWLLVVDD  DTLISLPRLQ  MLLSCYDPSE  PVCLGERYGY480
GLGQGGYSYI  TGGGGMVFSR  AAVVRLLASD  CKCYSNDAPD  DMVLGMCLNA  LGLPVTHSSL540
FHQARPEDYS  RDFLAHQVPI  SFHKHWNIDP  IAVFNRWLKD  ESRSTSPHGL  NQSTKEEL598

Predicted 3D structure by AlphaFold2 with pLDDT = 85.57 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MQAFAVAALS  IWLCLGATAL  AESHGPQPCT  SPNMTGVLTV  LALTGGEIKA  TGHYSYDSTD60
KKIRFTESEM  HLNKTEHLED  YLMLFEEGVF  YDIDMKNQSC  KKMSLHSHAH  ALDLPTGAAH120
QVELFLGSDT  VQEENIKVNI  WTGSVPETKD  LREIVFVIQS  QRNSFHVSRA  ERQRADLLHQ180
TQSLTQTPPP  VLLLHSLTDN  EGDWSILPVL  PYLSLLFGKN  SSWLVFLEEE  TNVKVTKLLQ240
ALRKFDRRKE  WFLGKPLHDE  EPTIIHHYAF  AENPSIFKYP  DFSAAWALSI  PLLDRLANKV300
RDDPLKSDFT  IDLKHEVALY  IWENGQGPRL  TAIPELCTEP  EHSPTAQHCA  TTLSSPAPLC360
GEPVKKEDIF  VAVKTCKKFH  TERVPVVKKT  WEREAFLLEY  YSDHTDPSIP  TIDLGVPNTE420
RGHCGKTFAI  LKRYVSDAVP  KTRWLLVVDD  DTLISLPRLQ  MLLSCYDPSE  PVCLGERYGY480
GLGQGGYSYI  TGGGGMVFSR  AAVVRLLASD  CKCYSNDAPD  DMVLGMCLNA  LGLPVTHSSL540
FHQARPEDYS  RDFLAHQVPI  SFHKHWNIDP  IAVFNRWLKD  ESRSTSPHGL  NQSTKEEL598

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT31(217-303)+GT31(420-537)

MQAFAVAALS  IWLCLGATAL  AESHGPQPCT  SPNMTGVLTV  LALTGGEIKA  TGHYSYDSTD60
KKIRFTESEM  HLNKTEHLED  YLMLFEEGVF  YDIDMKNQSC  KKMSLHSHAH  ALDLPTGAAH120
QVELFLGSDT  VQEENIKVNI  WTGSVPETKD  LREIVFVIQS  QRNSFHVSRA  ERQRADLLHQ180
TQSLTQTPPP  VLLLHSLTDN  EGDWSILPVL  PYLSLLFGKN  SSWLVFLEEE  TNVKVTKLLQ240
ALRKFDRRKE  WFLGKPLHDE  EPTIIHHYAF  AENPSIFKYP  DFSAAWALSI  PLLDRLANKV300
RDDPLKSDFT  IDLKHEVALY  IWENGQGPRL  TAIPELCTEP  EHSPTAQHCA  TTLSSPAPLC360
GEPVKKEDIF  VAVKTCKKFH  TERVPVVKKT  WEREAFLLEY  YSDHTDPSIP  TIDLGVPNTE420
RGHCGKTFAI  LKRYVSDAVP  KTRWLLVVDD  DTLISLPRLQ  MLLSCYDPSE  PVCLGERYGY480
GLGQGGYSYI  TGGGGMVFSR  AAVVRLLASD  CKCYSNDAPD  DMVLGMCLNA  LGLPVTHSSL540
FHQARPEDYS  RDFLAHQVPI  SFHKHWNIDP  IAVFNRWLKD  ESRSTSPHGL  NQSTKEEL598

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help